TSS: Rfhg 136752.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000529276.1:0 ENST00000528192.5:0 ENST00000530295.5:0 ENST00000534208.5:0 ENST00000534716.2:0 ENST00000263774.9:0 ENST00000533105.1:0 NM_004551.3:0 BC000617:0 AK313802:0 AK223255:0 AF067139:0 AF100743:0 AK294167:0 DQ895121:1 KJ891680:1 KR710624:1 KR710625:1 KR710626:1 DQ891934:1 ENST00000524568.1:9 ENST00000677462.1:33 ENST00000678975.1:38 ENST00000531351.2:49 | ||
|annotation=promoter-TSS (NM_004551) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2450440,EH38E1538351) | |ccre_description=PLS,CTCF-bound (EH38D2450440,EH38E1538351) | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.075000 | |cpg_percent=0.075000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_004551) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-24 | ||
|end=47579090 | |end=47579090 | ||
|entrez_id= | |entrez_id=4722 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.592593 | |gc_percent=0.592593 | ||
|gene_alias= | |gene_alias=CI-30{{!}}MC1DN8 | ||
|gene_description= | |gene_description=NADH:ubiquinone oxidoreductase core subunit S3 | ||
|gene_id=4722 | |gene_id=4722 | ||
|gene_name=NADH:ubiquinone oxidoreductase core subunit S3 | |gene_name=NADH:ubiquinone oxidoreductase core subunit S3 | ||
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|gene_symbol=NDUFS3 | |gene_symbol=NDUFS3 | ||
|gene_synonyms=CI-30 | |gene_synonyms=CI-30 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:7710 | |hgnc_mgi_id=HGNC:7710 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS-seq{{!}}RAMPAGE{{!}}ReCappable-seq{{!}}oligo_capping{{!}}NETCAGE{{!}}SLIC_CAGE{{!}}STRIPE-seq{{!}}TIF-seq2 | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000213619 | ||
|nearest_refseq= | |nearest_promoter_id=NM_004551 | ||
|nearest_unigene= | |nearest_refseq=NM_004551 | ||
|nearest_transcripts=DQ895121:1 KJ891680:1 KR710624:1 KR710625:1 KR710626:1 DQ891934:1 ENST00000524568.1:9 ENST00000677462.1:33 ENST00000678975.1:38 ENST00000531351.2:49 | |||
|nearest_unigene=Hs.502528 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DBTSS{{!}}DRA000914{{!}}ENCODE{{!}}RAMPAGE{{!}}PRJNA548673{{!}}PRJNA401781{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA615891{{!}}PRJNA597322 | |||
|species=human | |species=human | ||
|start= | |start=47579010 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000529276.1 ENST00000528192.5 ENST00000530295.5 ENST00000534208.5 ENST00000534716.2 ENST00000263774.9 ENST00000533105.1 BC000617 AK313802 AK223255 AF067139 AF100743 AK294167 | |transcript_name=ENST00000529276.1 ENST00000528192.5 ENST00000530295.5 ENST00000534208.5 ENST00000534716.2 ENST00000263774.9 ENST00000533105.1 BC000617 AK313802 AK223255 AF067139 AF100743 AK294167 | ||
|tss_cluster_detected=15 | |||
|tss_id=rfhg_136752.1 | |tss_id=rfhg_136752.1 | ||
|tss_id_v3=hg_114228.1;hg_233013.1 | |tss_id_v3=hg_114228.1;hg_233013.1 | ||
Latest revision as of 22:31, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|DBTSS|DRA000914|ENCODE|RAMPAGE|PRJNA548673 |PRJNA401781|PRJNA4843412|DRA013844|PRJNA615891|PRJNA597322 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS-seq|RAMPAGE|ReCappable-seq|oligo_capping|NETCAGE |SLIC_CAGE|STRIPE-seq|TIF-seq2 | |||||||||||||||
| TSS cluster detected* | 15 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2450440,EH38E1538351) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -24 |
|---|---|
| Nearest PromoterID: | NM_004551 |
| Entrez ID: | 4722 |
| Nearest Unigene: | Hs.502528 |
| Nearest Refseq: | NM_004551 |
| Nearest Ensembl: | ENSG00000213619 |
| Gene Name: | NADH:ubiquinone oxidoreductase core subunit S3 |
| Gene Alias: | CI-30|MC1DN8 |
| Gene Type: | protein-coding |
| CpG%: | 0.075000 |
| GC%: | 0.592593 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.