TSS: Rfhg 140712.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000298223.10)
|all_trans=ENST00000619261.4:0 ENST00000454954.6:0 ENST00000541003.5:0 ENST00000539412.5:0 ENST00000298223.11:0 ENST00000536778.5:0 NM_001113536.2:0 NM_001113534.2:0 NM_001113535.2:0 NM_000803.5:0 AK222539:0 AK222643:0 BC058036:0 AF000380:0 BC027894:5 ENST00000535625.5:25 ENST00000321324.11:30 J02876:32 EU832730:98 EU832652:98 ENST00000449475.6:-174
|annotation=promoter-TSS (NM_001113536)
|ccre_category=N
|ccre_category=N
|ccre_description=N
|ccre_description=N
|chr=chr11
|chr=chr11
|cpg_percent=0.076923
|cpg_percent=0.076923
|detailed_annotation=protein_coding-promoter-TSS (ENST00000298223.10)
|detailed_annotation=promoter-TSS (NM_001113536)
|distance=0
|distance=0
|distance_to_tss=-6
|distance_to_tss=-6
|end=72216801
|end=72216801
|entrez_id=ENSG00000165457
|entrez_id=2350
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.518519
|gc_percent=0.518519
|gene_alias=
|gene_alias=BETA-HFR{{!}}FBP{{!}}FBP/PL-1{{!}}FR-BETA{{!}}FR-P3{{!}}FRbeta
|gene_description=
|gene_description=folate receptor beta
|gene_id=2350
|gene_id=2350
|gene_name=folate receptor beta
|gene_name=folate receptor beta
Line 19: Line 20:
|gene_symbol=FOLR2
|gene_symbol=FOLR2
|gene_synonyms=FRβ
|gene_synonyms=FRβ
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:3793
|hgnc_mgi_id=HGNC:3793
|nearest_ensembl=
|methods=CAGE{{!}}TSS_database
|nearest_promoter_id=ENST00000539412.5
|nearest_ensembl=ENSG00000165457
|nearest_refseq=
|nearest_promoter_id=NM_001113534
|nearest_unigene=ENST00000538353
|nearest_refseq=NM_000803
|nearest_transcripts=BC027894:5 ENST00000535625.5:25 ENST00000321324.11:30 J02876:32 EU832730:98 EU832652:98 ENST00000449475.6:-174
|nearest_unigene=Hs.433159
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5{{!}}EPD{{!}}ENCODE
|species=human
|species=human
|start=72216774
|start=72216775
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 23:49, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_140712.1
Species:human
Chr:chr11
Start:72216775
End:72216801
Strand:+
Source datasetsFANTOM5|EPD|ENCODE
ProtocolCAGE|TSS_database
TSS cluster detected*3

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000619261.4:0
ENST00000454954.6:0
ENST00000541003.5:0
ENST00000539412.5:0
ENST00000298223.11:0
ENST00000536778.5:0
AK222539:0
AK222643:0
BC058036:0
GeneID:2350
HGNC/MGI_ID:HGNC:3793
UniProt_ID:A0A087WWY2 F5GZ45 F5H3Z4 F5H5L8 J3KR13 P14207 Q53HP1
Nearer transcript ids and distances:
  • BC027894:5
  • ENST00000535625.5:25
  • ENST00000321324.11:30
  • J02876:32
  • EU832730:98
  • EU832652:98
  • ENST00000449475.6:-174
view more...
Gene_name:folate receptor beta
Gene_symbol:FOLR2
Gene_synonyms:FRβ
Gene_source:HGNC:3793



TATA-Box annotation

Distance to TSS:-6
Nearest PromoterID:NM_001113534
Entrez ID:2350
Nearest Unigene:Hs.433159
Nearest Refseq:NM_000803
Nearest Ensembl:ENSG00000165457
Gene Name:folate receptor beta
Gene Alias:BETA-HFR|FBP|FBP/PL-1|FR-BETA|FR-P3|FRbeta
Gene Type:protein-coding
CpG%:0.076923
GC%:0.518519
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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