TSS: Rfhg 141412.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000612612.5) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2472970,EH38E1555083) |chr=chr11 |cpg_percent=0.000000 |de...")
 
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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000612612.5)
|all_trans=LF369000:47 MA604577:47 CR533448:-52 KJ897230:-53 AB528753:-54 AM392713:-56 ENST00000612612.5:-81 ENST00000614236.2:-81 AK022785:-102 AF087659:-116 AF369951:-124 ENST00000534029.5:-127 ENST00000525085.1:-127 ENST00000527806.1:-149 AK098173:-149 ENST00000528251.1:-152 AL050278:-157 AF369952:-162 AK023013:-168 ENST00000528164.1:-169 ENST00000281031.5:-170 NM_001203260.2:-170 NM_001203261.2:-170 NM_001203262.2:-170 NM_004549.6:-170 NM_001204054.3:-170 NM_001204055.2:-170 AF070652:-170 ENST00000530054.1:-173 BC007323:-193
|annotation=exon (NM_004549, exon 1 of 3)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2472970,EH38E1555083)
|ccre_description=PLS,CTCF-bound (EH38D2472970,EH38E1555083)
|chr=chr11
|chr=chr11
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000612612.5)
|detailed_annotation=exon (NM_004549, exon 1 of 3)
|distance=47
|distance=47
|distance_to_tss=86
|distance_to_tss=175
|end=78079692
|end=78079692
|entrez_id=ENSG00000259112
|entrez_id=100532726
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.818182
|gc_percent=0.818182
|gene_alias=
|gene_alias=-
|gene_description=
|gene_description=NDUFC2-KCTD14 readthrough
|gene_id=
|gene_id=
|gene_name=
|gene_name=
Line 19: Line 20:
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000612612.5
|nearest_ensembl=ENSG00000259112
|nearest_refseq=
|nearest_promoter_id=NM_001203261
|nearest_unigene=ENST00000528251
|nearest_refseq=NM_001203260
|nearest_transcripts=CR533448:-52 KJ897230:-53 AB528753:-54 AM392713:-56 ENST00000612612.5:-81 ENST00000614236.2:-81 AK022785:-102 AF087659:-116 AF369951:-124 ENST00000534029.5:-127 ENST00000525085.1:-127 ENST00000527806.1:-149 AK098173:-149 ENST00000528251.1:-152 AL050278:-157 AF369952:-162 AK023013:-168 ENST00000528164.1:-169 ENST00000281031.5:-170 NM_001203260.2:-170 NM_001203261.2:-170 NM_001203262.2:-170 NM_004549.6:-170 NM_001204054.3:-170 NM_001204055.2:-170 AF070652:-170 ENST00000530054.1:-173 BC007323:-193
|nearest_unigene=Hs.407860
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=78079681
|start=78079682
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 00:03, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_141412.1
Species:human
Chr:chr11
Start:78079682
End:78079692
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2472970,EH38E1555083)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF369000:47
MA604577:47
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • CR533448:-52
  • KJ897230:-53
  • AB528753:-54
  • AM392713:-56
  • ENST00000612612.5:-81
  • ENST00000614236.2:-81
  • AK022785:-102
  • AF087659:-116
  • AF369951:-124
  • ENST00000534029.5:-127
  • ENST00000525085.1:-127
  • ENST00000527806.1:-149
  • AK098173:-149
  • ENST00000528251.1:-152
  • AL050278:-157
  • AF369952:-162
  • AK023013:-168
  • ENST00000528164.1:-169
  • ENST00000281031.5:-170
  • NM_001203260.2:-170
  • NM_001203261.2:-170
  • NM_001203262.2:-170
  • NM_004549.6:-170
  • NM_001204054.3:-170
  • NM_001204055.2:-170
  • AF070652:-170
  • ENST00000530054.1:-173
  • BC007323:-193
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:175
Nearest PromoterID:NM_001203261
Entrez ID:100532726
Nearest Unigene:Hs.407860
Nearest Refseq:NM_001203260
Nearest Ensembl:ENSG00000259112
Gene Name:
Gene Alias:-
Gene Type:protein-coding
CpG%:0.000000
GC%:0.818182
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "CR533448:-52 KJ897230:-53 AB528753:-54 AM392713:-56 ENST00000612612.5:-81 ENST00000614236.2:-81 AK022785:-102 AF087659:-116 AF369951:-124 ENST00000534029.5:-127 ENST00000525085.1:-127 ENST00000527806.1:-149 AK098173:-149 ENST00000528251.1:-152 AL050278:-157 AF369952:-162 AK023013:-168 ENST00000528164.1:-169 ENST00000281031.5:-170 NM_001203260.2:-170 NM_001203261.2:-170 NM_001203262.2:-170 NM_004549.6:-170 NM_001204054.3:-170 NM_001204055.2:-170 AF070652:-170 ENST00000530054.1:-173 BC007323:-193" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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