TSS: Rfhg 142683.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000530950.2:0 NM_021571.4:0 ENST00000532895.1:158 ENST00000526823.1:469 | ||
|annotation=promoter-TSS (NM_021571) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EH38D2492035,EH38E1566489) | |ccre_description=pELS (EH38D2492035,EH38E1566489) | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_021571) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-1 | ||
|end=105139789 | |end=105139789 | ||
|entrez_id= | |entrez_id=59082 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.435897 | |gc_percent=0.435897 | ||
|gene_alias= | |gene_alias=ICEBERG{{!}}UNQ5804{{!}}pseudo-ICE | ||
|gene_description= | |gene_description=caspase recruitment domain family member 18 | ||
|gene_id=59082 | |gene_id=59082 | ||
|gene_name=caspase recruitment domain family member 18 | |gene_name=caspase recruitment domain family member 18 | ||
| Line 19: | Line 20: | ||
|gene_symbol=CARD18 | |gene_symbol=CARD18 | ||
|gene_synonyms=ICEBERG UNQ5804 pseudo-ICE | |gene_synonyms=ICEBERG UNQ5804 pseudo-ICE | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:28861 | |hgnc_mgi_id=HGNC:28861 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000255501 | ||
|nearest_refseq= | |nearest_promoter_id=NM_021571 | ||
|nearest_unigene= | |nearest_refseq=NM_021571 | ||
|nearest_transcripts=ENST00000532895.1:158 ENST00000526823.1:469 | |||
|nearest_unigene=Hs.56279 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=human | |species=human | ||
|start= | |start=105139751 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 00:27, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D2492035,EH38E1566489) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_021571 |
| Entrez ID: | 59082 |
| Nearest Unigene: | Hs.56279 |
| Nearest Refseq: | NM_021571 |
| Nearest Ensembl: | ENSG00000255501 |
| Gene Name: | caspase recruitment domain family member 18 |
| Gene Alias: | ICEBERG|UNQ5804|pseudo-ICE |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.435897 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.