TSS: Rfhg 147118.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
| | |all_trans=ENST00000542530.5:0 AF518873:-143 KJ895712:-143 NR_172485.1:-175 NR_172486.1:-175 ENST00000621400.4:-178 ENST00000327839.3:-178 BC093857:-178 BC093859:-178 | ||
|annotation=exon (NM_001267701, exon 1 of 3) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D2528629,EH38E1591935) | |ccre_description=PLS (EH38D2528629,EH38E1591935) | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=exon (NM_001267701, exon 1 of 3) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=185 | ||
|end=9733121 | |end=9733121 | ||
|entrez_id= | |entrez_id=160365 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.200000 | |gc_percent=0.200000 | ||
|gene_alias= | |gene_alias=DCAL-1{{!}}DCAL1 | ||
|gene_description= | |gene_description=C-type lectin like 1 | ||
|gene_id=160365 | |gene_id=160365 | ||
|gene_name=C-type lectin like 1, pseudogene | |gene_name=C-type lectin like 1, pseudogene | ||
| Line 19: | Line 20: | ||
|gene_symbol=CLECL1P | |gene_symbol=CLECL1P | ||
|gene_synonyms=DCAL1 | |gene_synonyms=DCAL1 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:24462 | |hgnc_mgi_id=HGNC:24462 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000184293 | ||
|nearest_refseq= | |nearest_promoter_id=NM_172004 | ||
|nearest_unigene= | |nearest_refseq=NM_172004 | ||
|nearest_transcripts=AF518873:-143 KJ895712:-143 NR_172485.1:-175 NR_172486.1:-175 ENST00000621400.4:-178 ENST00000327839.3:-178 BC093857:-178 BC093859:-178 | |||
|nearest_unigene=Hs.560087 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=9733107 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 01:55, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2528629,EH38E1591935) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 185 |
|---|---|
| Nearest PromoterID: | NM_172004 |
| Entrez ID: | 160365 |
| Nearest Unigene: | Hs.560087 |
| Nearest Refseq: | NM_172004 |
| Nearest Ensembl: | ENSG00000184293 |
| Gene Name: | C-type lectin like 1, pseudogene |
| Gene Alias: | DCAL-1|DCAL1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.200000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.