TSS: Rfhg 147358.1: Difference between revisions
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000536107.5) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D2529419,EH38E1592535) |chr=chr12 |cpg_percent=0.000000 |...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
| | |all_trans=DQ892686:-73 DQ895930:-73 AB463536:-73 ENST00000540447.5:127 AB209896:127 ENST00000536107.5:129 X95325:-247 BC015913:-256 BC015564:-264 BC021926:-266 ENST00000279550.11:-268 BC009744:-268 M24069:-269 BC008801:-273 X72712:-278 ENST00000228251.9:-284 NM_003651.5:-284 NM_001145426.2:-284 AK314846:-284 | ||
|annotation=exon (NM_003651, exon 1 of 10) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D2529419,EH38E1592535) | |ccre_description=pELS,CTCF-bound (EH38D2529419,EH38E1592535) | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=exon (NM_003651, exon 1 of 10) | ||
|distance=-73 | |distance=-73 | ||
|distance_to_tss= | |distance_to_tss=285 | ||
|end=10723039 | |end=10723039 | ||
|entrez_id= | |entrez_id=8531 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
|gene_alias= | |gene_alias=CSDA{{!}}CSDA1{{!}}DBPA{{!}}ZONAB | ||
|gene_description= | |gene_description=Y-box binding protein 3 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000060138 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001145426 | ||
|nearest_unigene= | |nearest_refseq=NM_003651 | ||
|nearest_transcripts=ENST00000540447.5:127 AB209896:127 ENST00000536107.5:129 X95325:-247 BC015913:-256 BC015564:-264 BC021926:-266 ENST00000279550.11:-268 BC009744:-268 M24069:-269 BC008801:-273 X72712:-278 ENST00000228251.9:-284 NM_003651.5:-284 NM_001145426.2:-284 AK314846:-284 | |||
|nearest_unigene=Hs.221889 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=10723038 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 02:00, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2529419,EH38E1592535) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 285 |
|---|---|
| Nearest PromoterID: | NM_001145426 |
| Entrez ID: | 8531 |
| Nearest Unigene: | Hs.221889 |
| Nearest Refseq: | NM_003651 |
| Nearest Ensembl: | ENSG00000060138 |
| Gene Name: | |
| Gene Alias: | CSDA|CSDA1|DBPA|ZONAB |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000540447.5:127 AB209896:127 ENST00000536107.5:129 X95325:-247 BC015913:-256 BC015564:-264 BC021926:-266 ENST00000279550.11:-268 BC009744:-268 M24069:-269 BC008801:-273 X72712:-278 ENST00000228251.9:-284 NM_003651.5:-284 NM_001145426.2:-284 AK314846:-284" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.