TSS: Rfhg 157135.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=TTS ( | |all_trans=M11771:-420 | ||
|annotation=TTS (NR_003137) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D2615219,EH38E1649825) | |ccre_description=pELS,CTCF-bound (EH38D2615219,EH38E1649825) | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=TTS (NR_003137) | ||
|distance=-420 | |distance=-420 | ||
|distance_to_tss=521 | |distance_to_tss=521 | ||
|end=120291384 | |end=120291384 | ||
|entrez_id= | |entrez_id=26834 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=RNU4-1B{{!}}RNU4B1{{!}}RNU4C{{!}}U4A{{!}}U4b{{!}}U4c | ||
|gene_description= | |gene_description=RNA, U4 small nuclear 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 21: | Line 22: | ||
|gene_type=snRNA | |gene_type=snRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000202538 | ||
|nearest_refseq= | |nearest_promoter_id=NR_003137 | ||
|nearest_unigene= | |nearest_refseq=NR_003137 | ||
|nearest_transcripts= | |||
|nearest_unigene= | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=120291381 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 05:06, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2615219,EH38E1649825) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 521 |
|---|---|
| Nearest PromoterID: | NR_003137 |
| Entrez ID: | 26834 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_003137 |
| Nearest Ensembl: | ENSG00000202538 |
| Gene Name: | |
| Gene Alias: | RNU4-1B|RNU4B1|RNU4C|U4A|U4b|U4c |
| Gene Type: | snRNA |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |