TSS: Rfhg 158405.1: Difference between revisions
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|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=CpG | ||
|distance=434 | |distance=434 | ||
|distance_to_tss= | |distance_to_tss=-15567 | ||
|end=132474592 | |end=132474592 | ||
|entrez_id= | |entrez_id=57666 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.411765 | |gc_percent=0.411765 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=fibrosin like 1 | ||
|gene_id=100129528 | |gene_id=100129528 | ||
|gene_name= | |gene_name=FBRSL1 | ||
|gene_source=HGNC:7519 | |gene_source=HGNC:7519 | ||
|gene_symbol=MUC8 | |gene_symbol=MUC8 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:7519 | |hgnc_mgi_id=HGNC:7519 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000112787 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001367871 | ||
|nearest_unigene= | |nearest_refseq=NM_001142641 | ||
|nearest_unigene=Hs.411138 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=132474576 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 08:44, 7 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2626536,EH38E1657587) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -15567 |
|---|---|
| Nearest PromoterID: | NM_001367871 |
| Entrez ID: | 57666 |
| Nearest Unigene: | Hs.411138 |
| Nearest Refseq: | NM_001142641 |
| Nearest Ensembl: | ENSG00000112787 |
| Gene Name: | FBRSL1 |
| Gene Alias: | - |
| Gene Description: | fibrosin like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.411765 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.