TSS: Hg 101624.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=14834 |entrez_id=7111 |gc_percent=0.527363 |gene_alias=D9S57E|ETMOD|TMOD |gene_description=tropomodulin 1 |gene_name=TMOD1 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
|ETMOD= | |||
|TMOD= | |||
|all_trans=ENST00000451595.7:-226 | |||
|chr=chr9 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance_to_tss= | |distance=-226 | ||
|distance_to_tss=14807 | |||
|end=97516480 | |||
|end_of_center_position=97516473 | |||
|entrez_id=7111 | |entrez_id=7111 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
|gene_alias=D9S57E | |gene_alias=D9S57E{{!}}ETMOD{{!}}TMOD | ||
|gene_description=tropomodulin 1 | |gene_description=tropomodulin 1 | ||
|gene_name=TMOD1 | |gene_name=TMOD1 | ||
| Line 12: | Line 19: | ||
|nearest_refseq=NM_003275 | |nearest_refseq=NM_003275 | ||
|nearest_unigene=Hs.404289 | |nearest_unigene=Hs.404289 | ||
|tata_box= | |num_trans=1 | ||
|species=human | |||
|start=97516465 | |||
|start_of_center_position=97516472 | |||
|strand=- | |||
|tata_box=32(GTCTTTAAAGCG,+,0.00),33(TCTTTAAAGCGC,+,0.00) | |||
|transcript_name=ENST00000451595.7 | |||
|tss_classification=no | |||
|tss_id=hg_101624.1 | |tss_id=hg_101624.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:44, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 14807 |
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| Nearest PromoterID: | NM_003275 |
| Entrez ID: | 7111 |
| Nearest Unigene: | Hs.404289 |
| Nearest Refseq: | NM_003275 |
| Nearest Ensembl: | ENSG00000136842 |
| Gene Name: | TMOD1 |
| Gene Alias: | D9S57E|ETMOD|TMOD |
| Gene Description: | tropomodulin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 32(GTCTTTAAAGCG,+,0.00),33(TCTTTAAAGCGC,+,0.00) |