TSS: Rfhg 160037.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=MG828508:20 | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=N | |ccre_category=N | ||
| Line 9: | Line 10: | ||
|distance_to_tss=-34166 | |distance_to_tss=-34166 | ||
|end=42747389 | |end=42747389 | ||
|entrez_id= | |entrez_id=144809 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.200000 | |gc_percent=0.200000 | ||
|gene_alias= | |gene_alias=C13orf30 | ||
|gene_description= | |gene_description=family with sequence similarity 216 member B | ||
|gene_id=124903164 | |gene_id=124903164 | ||
|gene_name=uncharacterized LOC124903164 | |gene_name=uncharacterized LOC124903164 | ||
| Line 19: | Line 20: | ||
|gene_symbol=LOC124903164 | |gene_symbol=LOC124903164 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000179813 | ||
|nearest_refseq= | |nearest_promoter_id=NM_182508 | ||
|nearest_unigene= | |nearest_refseq=NM_182508 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.16970 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=42747380 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 06:00, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -34166 |
|---|---|
| Nearest PromoterID: | NM_182508 |
| Entrez ID: | 144809 |
| Nearest Unigene: | Hs.16970 |
| Nearest Refseq: | NM_182508 |
| Nearest Ensembl: | ENSG00000179813 |
| Gene Name: | uncharacterized LOC124903164 |
| Gene Alias: | C13orf30 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.200000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.