TSS: Rfhg 16093.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=NR_003942.1:0 NR_003941.1:-220 LP895763:-220 ENST00000422008.5:-312 BC070486:-320 ENST00000425771.5:-322 ENST00000436285.5:-325 ENST00000448718.5:-325 ENST00000456812.6:-325 ENST00000422183.5:-325 ENST00000442067.5:-325 ENST00000651080.1:-327 NR_003943.2:336 NR_132783.1:416 ENST00000414075.5:500 | ||
|annotation=promoter-TSS (NR_002750) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EH38D2241522,EH38E1398581) | |ccre_description=pELS (EH38D2241522,EH38E1398581) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_002750) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=3 | ||
|end=173866718 | |end=173866718 | ||
|entrez_id= | |entrez_id=692196 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.461538 | |gc_percent=0.461538 | ||
|gene_alias= | |gene_alias=U76 | ||
|gene_description= | |gene_description=small nucleolar RNA, C/D box 76 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=snoRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE{{!}}TSS-seq | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_003942 | ||
|nearest_refseq= | |nearest_refseq=NR_003942 | ||
|nearest_unigene= | |nearest_transcripts=NR_003941.1:-220 LP895763:-220 ENST00000422008.5:-312 BC070486:-320 ENST00000425771.5:-322 ENST00000436285.5:-325 ENST00000448718.5:-325 ENST00000456812.6:-325 ENST00000422183.5:-325 ENST00000442067.5:-325 ENST00000651080.1:-327 NR_003943.2:336 NR_132783.1:416 ENST00000414075.5:500 | ||
|nearest_unigene= | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DBTSS | |||
|species=human | |species=human | ||
|start= | |start=173866706 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 06:17, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|DBTSS | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS-seq | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D2241522,EH38E1398581) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NR_003942 |
| Entrez ID: | 692196 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_003942 |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | U76 |
| Gene Type: | snoRNA |
| CpG%: | 0.000000 |
| GC%: | 0.461538 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "NR_003941.1:-220 LP895763:-220 ENST00000422008.5:-312 BC070486:-320 ENST00000425771.5:-322 ENST00000436285.5:-325 ENST00000448718.5:-325 ENST00000456812.6:-325 ENST00000422183.5:-325 ENST00000442067.5:-325 ENST00000651080.1:-327 NR_003943.2:336 NR_132783.1:416 ENST00000414075.5:500" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.