TSS: Rfhg 161645.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |all_trans=ENST00000665186.1:0 ENST00000669091.1:0 ENST00000660876.1:0 ENST00000655229.1:0 ENST00000654491.1:7 ENST00000667488.1:9 ENST00000661648.1:12 | ||
|annotation=promoter-TSS (NR_125770) | |||
|ccre_category=DNase-H3K4me3 | |ccre_category=DNase-H3K4me3 | ||
|ccre_description=DNase-H3K4me3,CTCF-bound (EH38D2672575,EH38E1686383) | |ccre_description=DNase-H3K4me3,CTCF-bound (EH38D2672575,EH38E1686383) | ||
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_125770) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-659 | ||
|end=81017743 | |end=81017743 | ||
|entrez_id= | |entrez_id=103724386 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.478261 | |gc_percent=0.478261 | ||
|gene_alias= | |gene_alias=TCONS_00021861 | ||
|gene_description= | |gene_description=long intergenic non-protein coding RNA 377 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_125770 | ||
|nearest_refseq= | |nearest_refseq=NR_125770 | ||
|nearest_unigene= | |nearest_transcripts=ENST00000654491.1:7 ENST00000667488.1:9 ENST00000661648.1:12 | ||
|nearest_unigene=Hs.539622 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=81017721 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 06:31, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | DNase-H3K4me3,CTCF-bound (EH38D2672575,EH38E1686383) |
|---|---|
| Category: | DNase-H3K4me3 |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -659 |
|---|---|
| Nearest PromoterID: | NR_125770 |
| Entrez ID: | 103724386 |
| Nearest Unigene: | Hs.539622 |
| Nearest Refseq: | NR_125770 |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | TCONS_00021861 |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.478261 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |