TSS: Rfhg 161875.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=promoter-TSS (NR_158368) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EH38D2679980,EH38E1689658) | |ccre_description=pELS (EH38D2679980,EH38E1689658) | ||
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.030303 | |cpg_percent=0.030303 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_158368) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=-193 | ||
|end=94713653 | |end=94713653 | ||
|entrez_id= | |entrez_id=112268114 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=uncharacterized LOC112268114 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=LOC112268114 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_158368 | ||
|nearest_refseq= | |nearest_refseq=NR_158368 | ||
|nearest_unigene= | |nearest_unigene=Hs.741900 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=94713620 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 09:47, 7 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D2679980,EH38E1689658) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -193 |
|---|---|
| Nearest PromoterID: | NR_158368 |
| Entrez ID: | 112268114 |
| Nearest Unigene: | Hs.741900 |
| Nearest Refseq: | NR_158368 |
| Nearest Ensembl: | |
| Gene Name: | LOC112268114 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC112268114 |
| Gene Type: | ncRNA |
| CpG%: | 0.030303 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |