TSS: Rfhg 164537.1: Difference between revisions
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000250495.9) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2701011,EH38E1703695) |chr=chr14 |cpg_percent=0.000000 |de...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=LY501377:-166 MA780265:-166 LY501378:-250 MA780266:-250 LY501379:-288 MA780267:-288 ENST00000250495.10:474 NM_001199823.3:474 NR_137632.2:474 NR_137630.2:474 NR_137631.2:474 NM_006156.3:474 BC104664:474 D23662:475 ENST00000533242.1:486 BC104200:486 BC104201:486 BC064899:486 ENST00000524927.1:487 ENST00000534348.5:489 | ||
|annotation=promoter-TSS (NM_006156) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2701011,EH38E1703695) | |ccre_description=PLS,CTCF-bound (EH38D2701011,EH38E1703695) | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_006156) | ||
|distance=-166 | |distance=-166 | ||
|distance_to_tss=- | |distance_to_tss=-81 | ||
|end=24232856 | |end=24232856 | ||
|entrez_id= | |entrez_id=51292 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=GMPR 2 | ||
|gene_description= | |gene_description=guanosine monophosphate reductase 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000100938 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001351026 | ||
|nearest_unigene= | |nearest_refseq=NM_016576 | ||
|nearest_transcripts=LY501378:-250 MA780266:-250 LY501379:-288 MA780267:-288 ENST00000250495.10:474 NM_001199823.3:474 NR_137632.2:474 NR_137630.2:474 NR_137631.2:474 NM_006156.3:474 BC104664:474 D23662:475 ENST00000533242.1:486 BC104200:486 BC104201:486 BC064899:486 ENST00000524927.1:487 ENST00000534348.5:489 | |||
|nearest_unigene=Hs.368855 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=24232841 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 07:25, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2701011,EH38E1703695) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -81 |
|---|---|
| Nearest PromoterID: | NM_001351026 |
| Entrez ID: | 51292 |
| Nearest Unigene: | Hs.368855 |
| Nearest Refseq: | NM_016576 |
| Nearest Ensembl: | ENSG00000100938 |
| Gene Name: | |
| Gene Alias: | GMPR 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "LY501378:-250 MA780266:-250 LY501379:-288 MA780267:-288 ENST00000250495.10:474 NM_001199823.3:474 NR_137632.2:474 NR_137630.2:474 NR_137631.2:474 NM_006156.3:474 BC104664:474 D23662:475 ENST00000533242.1:486 BC104200:486 BC104201:486 BC064899:486 ENST00000524927.1:487 ENST00000534348.5:489" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.