TSS: Rfhg 166490.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=non-coding (NR_029435, exon 3 of 4) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=non-coding (NR_029435, exon 3 of 4) | ||
|distance=-20 | |distance=-20 | ||
|distance_to_tss= | |distance_to_tss=-14022 | ||
|end=58274018 | |end=58274018 | ||
|entrez_id= | |entrez_id=55451 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.285714 | |gc_percent=0.285714 | ||
|gene_alias= | |gene_alias=C14orf107{{!}}NCRNA00216{{!}}PRO1617 | ||
|gene_description= | |gene_description=long intergenic non-protein coding RNA 216 | ||
|gene_id=379025 | |gene_id=379025 | ||
|gene_name= | |gene_name=LINC00216 | ||
|gene_source=HGNC:26445 | |gene_source=HGNC:26445 | ||
|gene_symbol=PSMA3-AS1 | |gene_symbol=PSMA3-AS1 | ||
|gene_synonyms=FLJ31306 | |gene_synonyms=FLJ31306 | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:26445 | |hgnc_mgi_id=HGNC:26445 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000279636 | ||
|nearest_refseq= | |nearest_promoter_id=NR_146595 | ||
|nearest_unigene= | |nearest_refseq=NR_146595 | ||
|nearest_unigene= | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=58274005 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 11:12, 7 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | -14022 |
|---|---|
| Nearest PromoterID: | NR_146595 |
| Entrez ID: | 55451 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_146595 |
| Nearest Ensembl: | ENSG00000279636 |
| Gene Name: | LINC00216 |
| Gene Alias: | C14orf107|NCRNA00216|PRO1617 |
| Gene Description: | long intergenic non-protein coding RNA 216 |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.285714 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.