TSS: Rfhg 166836.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000229465.10:-75 NR_039985.1:-75 AK026100:-75 ENST00000556569.5:-210 | ||
|annotation=promoter-TSS (NR_110417) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D2726402,EH38E1719712) | |ccre_description=PLS (EH38D2726402,EH38E1719712) | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_110417) | ||
|distance=-75 | |distance=-75 | ||
|distance_to_tss= | |distance_to_tss=34 | ||
|end=61570623 | |end=61570623 | ||
|entrez_id= | |entrez_id=101927780 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=long intergenic non-protein coding RNA 1303 | ||
|gene_id=400221 | |gene_id=400221 | ||
|gene_name=long intergenic non-protein coding RNA 3033 | |gene_name=long intergenic non-protein coding RNA 3033 | ||
| Line 19: | Line 20: | ||
|gene_symbol=LINC03033 | |gene_symbol=LINC03033 | ||
|gene_synonyms=FLJ22447 LncRNA-CAF | |gene_synonyms=FLJ22447 LncRNA-CAF | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:44292 | |hgnc_mgi_id=HGNC:44292 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000250548 | ||
|nearest_refseq= | |nearest_promoter_id=NR_110416 | ||
|nearest_unigene= | |nearest_refseq=NR_110416 | ||
|nearest_transcripts=ENST00000556569.5:-210 | |||
|nearest_unigene=Hs.254789 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=61570615 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 08:08, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2726402,EH38E1719712) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 34 |
|---|---|
| Nearest PromoterID: | NR_110416 |
| Entrez ID: | 101927780 |
| Nearest Unigene: | Hs.254789 |
| Nearest Refseq: | NR_110416 |
| Nearest Ensembl: | ENSG00000250548 |
| Gene Name: | long intergenic non-protein coding RNA 3033 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.