TSS: Rfhg 167754.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001284209) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2734240,EH38E1725300) | |ccre_description=PLS,CTCF-bound (EH38D2734240,EH38E1725300) | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.098765 | |cpg_percent=0.098765 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001284209) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=13 | ||
|end=70600718 | |end=70600718 | ||
|entrez_id= | |entrez_id=10001 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.536585 | |gc_percent=0.536585 | ||
|gene_alias= | |gene_alias=ARC33{{!}}NY-REN-28 | ||
|gene_description= | |gene_description=mediator complex subunit 6 | ||
|gene_id=10001 | |gene_id=10001 | ||
|gene_name= | |gene_name=MED6 | ||
|gene_source=HGNC:19970 | |gene_source=HGNC:19970 | ||
|gene_symbol=MED6 | |gene_symbol=MED6 | ||
|gene_synonyms=NY-REN-28 | |gene_synonyms=NY-REN-28 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:19970 | |hgnc_mgi_id=HGNC:19970 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database{{!}}TSS-seq{{!}}TIF-seq2{{!}}RAMPAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}C1CAGE{{!}}NETCAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000133997 | ||
|nearest_refseq= | |nearest_promoter_id=NM_005466 | ||
|nearest_unigene= | |nearest_refseq=NM_005466 | ||
|nearest_unigene=Hs.497353 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DBTSS{{!}}DRA000914{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start= | |start=70600637 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000554963.5 ENST00000256379.10 ENST00000615788.4 ENST00000430055.6 ENST00000440435.2 ENST00000553611.5 ENST00000556044.5 ENST00000556495.5 ENST00000554870.5 ENST00000556423.1 AK222587 AK300460 AK223346 AK290647 BC004106 AK304361 AF074723 BT006831 AB463868 CR541697 U78082 AK300417 | |transcript_name=ENST00000554963.5 ENST00000256379.10 ENST00000615788.4 ENST00000430055.6 ENST00000440435.2 ENST00000553611.5 ENST00000556044.5 ENST00000556495.5 ENST00000554870.5 ENST00000556423.1 AK222587 AK300460 AK223346 AK290647 BC004106 AK304361 AF074723 BT006831 AB463868 CR541697 U78082 AK300417 | ||
|tss_cluster_detected=14 | |||
|tss_id=rfhg_167754.1 | |tss_id=rfhg_167754.1 | ||
|tss_id_v3=hg_143922.1 | |tss_id_v3=hg_143922.1 | ||
Latest revision as of 11:36, 7 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DBTSS|DRA000914|PRJNA615891|PRJNA401781 |PRJNA548673|PRJDB5282|PRJNA4843412|DRA013844 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|TSS-seq|TIF-seq2|RAMPAGE|oligo_capping |ReCappable-seq|SLIC_CAGE|C1CAGE|NETCAGE | |||||||||||||||
| TSS cluster detected* | 14 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2734240,EH38E1725300) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_005466 |
| Entrez ID: | 10001 |
| Nearest Unigene: | Hs.497353 |
| Nearest Refseq: | NM_005466 |
| Nearest Ensembl: | ENSG00000133997 |
| Gene Name: | MED6 |
| Gene Alias: | ARC33|NY-REN-28 |
| Gene Description: | mediator complex subunit 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.098765 |
| GC%: | 0.536585 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.