TSS: Rfhg 169465.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000298894.4)
|all_trans=ENST00000415050.3:15 NM_001098621.4:15 ENST00000557574.1:-298 BC030119:-302 AL080118:-305 ENST00000557048.1:-317 NM_015676.3:-317 ENST00000554824.5:-318 ENST00000283534.4:-340
|annotation=promoter-TSS (NM_022151)
|ccre_category=pELS
|ccre_category=pELS
|ccre_description=pELS,CTCF-bound (EH38D2752888,EH38E1737601)
|ccre_description=pELS,CTCF-bound (EH38D2752888,EH38E1737601)
|chr=chr14
|chr=chr14
|cpg_percent=0.181818
|cpg_percent=0.181818
|detailed_annotation=protein_coding-promoter-TSS (ENST00000298894.4)
|detailed_annotation=promoter-TSS (NM_022151)
|distance=15
|distance=15
|distance_to_tss=283
|distance_to_tss=322
|end=93185302
|end=93185302
|entrez_id=ENSG00000153485
|entrez_id=26175
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.750000
|gc_percent=0.750000
|gene_alias=
|gene_alias=C14orf109
|gene_description=
|gene_description=transmembrane protein 251
|gene_id=26175
|gene_id=26175
|gene_name=lysosomal enzyme trafficking factor
|gene_name=lysosomal enzyme trafficking factor
Line 19: Line 20:
|gene_symbol=LYSET
|gene_symbol=LYSET
|gene_synonyms=DKFZP564F1123 GCAF
|gene_synonyms=DKFZP564F1123 GCAF
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:20218
|hgnc_mgi_id=HGNC:20218
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000415050.2
|nearest_ensembl=ENSG00000153485
|nearest_refseq=
|nearest_promoter_id=NM_015676
|nearest_unigene=ENST00000283534
|nearest_refseq=NM_015676
|nearest_transcripts=ENST00000557574.1:-298 BC030119:-302 AL080118:-305 ENST00000557048.1:-317 NM_015676.3:-317 ENST00000554824.5:-318 ENST00000283534.4:-340
|nearest_unigene=Hs.275352
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=93185290
|start=93185291
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 08:57, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_169465.1
Species:human
Chr:chr14
Start:93185291
End:93185302
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS,CTCF-bound (EH38D2752888,EH38E1737601)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000415050.3:15
GeneID:26175
HGNC/MGI_ID:HGNC:20218
UniProt_ID:Q8N6I4
Nearer transcript ids and distances:
  • ENST00000557574.1:-298
  • BC030119:-302
  • AL080118:-305
  • ENST00000557048.1:-317
  • NM_015676.3:-317
  • ENST00000554824.5:-318
  • ENST00000283534.4:-340
view more...
Gene_name:lysosomal enzyme trafficking factor
Gene_symbol:LYSET
Gene_synonyms:DKFZP564F1123 GCAF
Gene_source:HGNC:20218



TATA-Box annotation

Distance to TSS:322
Nearest PromoterID:NM_015676
Entrez ID:26175
Nearest Unigene:Hs.275352
Nearest Refseq:NM_015676
Nearest Ensembl:ENSG00000153485
Gene Name:lysosomal enzyme trafficking factor
Gene Alias:C14orf109
Gene Type:protein-coding
CpG%:0.181818
GC%:0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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