TSS: Rfhg 169466.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000298894.4) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D2752888,EH38E1737601) |chr=chr14 |cpg_percent=0.050000 |...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000415050.3:0 NM_001098621.4:0 ENST00000557574.1:-312 BC030119:-316 AL080118:-319 ENST00000557048.1:-331 NM_015676.3:-331 ENST00000554824.5:-332 ENST00000283534.4:-354 | ||
|annotation=promoter-TSS (NM_022151) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D2752888,EH38E1737601) | |ccre_description=pELS,CTCF-bound (EH38D2752888,EH38E1737601) | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.050000 | |cpg_percent=0.050000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_022151) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=341 | ||
|end=93185325 | |end=93185325 | ||
|entrez_id= | |entrez_id=26175 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.428571 | |gc_percent=0.428571 | ||
|gene_alias= | |gene_alias=C14orf109 | ||
|gene_description= | |gene_description=transmembrane protein 251 | ||
|gene_id=26175 | |gene_id=26175 | ||
|gene_name=lysosomal enzyme trafficking factor | |gene_name=lysosomal enzyme trafficking factor | ||
| Line 19: | Line 20: | ||
|gene_symbol=LYSET | |gene_symbol=LYSET | ||
|gene_synonyms=DKFZP564F1123 GCAF | |gene_synonyms=DKFZP564F1123 GCAF | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:20218 | |hgnc_mgi_id=HGNC:20218 | ||
|nearest_ensembl= | |methods=NETCAGE{{!}}CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000153485 | ||
|nearest_refseq= | |nearest_promoter_id=NM_015676 | ||
|nearest_unigene= | |nearest_refseq=NM_015676 | ||
|nearest_transcripts=ENST00000557574.1:-312 BC030119:-316 AL080118:-319 ENST00000557048.1:-331 NM_015676.3:-331 ENST00000554824.5:-332 ENST00000283534.4:-354 | |||
|nearest_unigene=Hs.275352 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start= | |start=93185305 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000415050.3 | |transcript_name=ENST00000415050.3 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfhg_169466.1 | |tss_id=rfhg_169466.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q8N6I4 | |uniprot_id=Q8N6I4 | ||
}} | }} | ||
Latest revision as of 08:57, 14 March 2025
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2752888,EH38E1737601) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 341 |
|---|---|
| Nearest PromoterID: | NM_015676 |
| Entrez ID: | 26175 |
| Nearest Unigene: | Hs.275352 |
| Nearest Refseq: | NM_015676 |
| Nearest Ensembl: | ENSG00000153485 |
| Gene Name: | lysosomal enzyme trafficking factor |
| Gene Alias: | C14orf109 |
| Gene Type: | protein-coding |
| CpG%: | 0.050000 |
| GC%: | 0.428571 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.