TSS: Rfhg 169858.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000539359.1:0 ENST00000554311.2:0 ENST00000553811.1:0 NM_000623.4:0 NM_001379692.1:0 AK311049:0 AK299316:0 KJ950627:0 KJ950628:0 M88714:0 U35875:-20 ENST00000542454.2:-136 CR749338:-136 | ||
|annotation=promoter-TSS (NM_000623) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2755774,EH38E1739677) | |ccre_description=PLS,CTCF-bound (EH38D2755774,EH38E1739677) | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.058824 | |cpg_percent=0.058824 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_000623) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=68 | ||
|end=96204917 | |end=96204917 | ||
|entrez_id= | |entrez_id=624 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.679612 | |gc_percent=0.679612 | ||
|gene_alias= | |gene_alias=B2R{{!}}BK-2{{!}}BK2{{!}}BKR2{{!}}BRB2 | ||
|gene_description= | |gene_description=bradykinin receptor B2 | ||
|gene_id=623 624 | |gene_id=623 624 | ||
|gene_name=bradykinin receptor B1; bradykinin receptor B2 | |gene_name=bradykinin receptor B1; bradykinin receptor B2 | ||
| Line 19: | Line 20: | ||
|gene_symbol=BDKRB1 BDKRB2 | |gene_symbol=BDKRB1 BDKRB2 | ||
|gene_synonyms=B1BKR BK-2 BKR1 bradyb1 | |gene_synonyms=B1BKR BK-2 BKR1 bradyb1 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:1029 HGNC:1030 | |hgnc_mgi_id=HGNC:1029 HGNC:1030 | ||
|nearest_ensembl= | |methods=CAGE{{!}}NETCAGE{{!}}C1CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000168398 | ||
|nearest_refseq= | |nearest_promoter_id=NM_000623 | ||
|nearest_unigene= | |nearest_refseq=NM_000623 | ||
|nearest_transcripts=U35875:-20 ENST00000542454.2:-136 CR749338:-136 | |||
|nearest_unigene=Hs.654542 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282 | |||
|species=human | |species=human | ||
|start= | |start=96204815 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000539359.1 ENST00000554311.2 AK311049 AK299316 KJ950627 KJ950628 M88714 | |transcript_name=ENST00000539359.1 ENST00000554311.2 AK311049 AK299316 KJ950627 KJ950628 M88714 | ||
|tss_cluster_detected=4 | |||
|tss_id=rfhg_169858.1 | |tss_id=rfhg_169858.1 | ||
|tss_id_v3=hg_141333.1;hg_141332.1 | |tss_id_v3=hg_141333.1;hg_141332.1 | ||
Latest revision as of 09:05, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|PRJNA4843412|DRA013844|PRJDB5282 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|NETCAGE|C1CAGE | |||||||||||||||
| TSS cluster detected* | 4 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2755774,EH38E1739677) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | 68 |
|---|---|
| Nearest PromoterID: | NM_000623 |
| Entrez ID: | 624 |
| Nearest Unigene: | Hs.654542 |
| Nearest Refseq: | NM_000623 |
| Nearest Ensembl: | ENSG00000168398 |
| Gene Name: | bradykinin receptor B1; bradykinin receptor B2 |
| Gene Alias: | B2R|BK-2|BK2|BKR2|BRB2 |
| Gene Type: | protein-coding |
| CpG%: | 0.058824 |
| GC%: | 0.679612 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.