TSS: Rfhg 171619.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_003297) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_003297) | ||
|distance=-1 | |distance=-1 | ||
|distance_to_tss=1 | |distance_to_tss=1 | ||
|end=25178739 | |end=25178739 | ||
|entrez_id= | |entrez_id=100033442 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
|gene_alias= | |gene_alias=HBII-52-5 | ||
|gene_description= | |gene_description=small nucleolar RNA, C/D box 115-5 | ||
|gene_id=100033442 | |gene_id=100033442 | ||
|gene_name= | |gene_name=SNORD115-5 | ||
|gene_source=HGNC:33024 | |gene_source=HGNC:33024 | ||
|gene_symbol=SNORD115-5 | |gene_symbol=SNORD115-5 | ||
| Line 21: | Line 21: | ||
|gene_type=snoRNA | |gene_type=snoRNA | ||
|hgnc_mgi_id=HGNC:33024 | |hgnc_mgi_id=HGNC:33024 | ||
|nearest_ensembl= | |methods=ReCappable-seq | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000200503 | ||
|nearest_refseq= | |nearest_promoter_id=NR_003297 | ||
|nearest_unigene= | |nearest_refseq=NR_003297 | ||
|nearest_unigene= | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA548673 | |||
|species=human | |species=human | ||
|start= | |start=25178739 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 12:44, 7 December 2023
Basic information about the TSS
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| Source datasets | PRJNA548673 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ReCappable-seq | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NR_003297 |
| Entrez ID: | 100033442 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_003297 |
| Nearest Ensembl: | ENSG00000200503 |
| Gene Name: | SNORD115-5 |
| Gene Alias: | HBII-52-5 |
| Gene Description: | small nucleolar RNA, C/D box 115-5 |
| Gene Type: | snoRNA |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.