TSS: Rfhg 171984.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000361627.8:0 NM_001368319.1:0 NM_199357.3:0 NM_001286480.3:0 NM_014783.6:0 D87717:0 BC050545:1 ENST00000567348.5:5 BC063444:5 MH721904:-24 ENST00000563864.5:31 ENST00000543522.5:37 BC039563:101 ENST00000563330.1:-320 ENST00000565905.5:-328 NM_001286479.3:-328 AK316437:-328 | ||
|annotation=promoter-TSS (NR_135833).3 | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2773038,EH38E1751284) | |ccre_description=PLS,CTCF-bound (EH38D2773038,EH38E1751284) | ||
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.048387 | |cpg_percent=0.048387 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_135833).3 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-1 | ||
|end=32615534 | |end=32615534 | ||
|entrez_id= | |entrez_id=9824 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias= | |gene_alias=GAP (1-12) | ||
|gene_description= | |gene_description=Rho GTPase activating protein 11A | ||
|gene_id=9824 | |gene_id=9824 | ||
|gene_name=Rho GTPase activating protein 11A | |gene_name=Rho GTPase activating protein 11A | ||
| Line 19: | Line 20: | ||
|gene_symbol=ARHGAP11A | |gene_symbol=ARHGAP11A | ||
|gene_synonyms=KIAA0013 | |gene_synonyms=KIAA0013 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:15783 | |hgnc_mgi_id=HGNC:15783 | ||
|nearest_ensembl= | |methods=CAGE{{!}}RAMPAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}NETCAGE{{!}}STRIPE-seq{{!}}oligo_capping{{!}}C1CAGE{{!}}TIF-seq2 | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000198826 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001286480 | ||
|nearest_unigene= | |nearest_refseq=NM_014783 | ||
|nearest_transcripts=BC050545:1 ENST00000567348.5:5 BC063444:5 MH721904:-24 ENST00000563864.5:31 ENST00000543522.5:37 BC039563:101 ENST00000563330.1:-320 ENST00000565905.5:-328 NM_001286479.3:-328 AK316437:-328 | |||
|nearest_unigene=Hs.591130 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA000914{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA597322{{!}}PRJDB5282 | |||
|species=human | |species=human | ||
|start= | |start=32615472 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000361627.8 D87717 | |transcript_name=ENST00000361627.8 D87717 | ||
|tss_cluster_detected=13 | |||
|tss_id=rfhg_171984.1 | |tss_id=rfhg_171984.1 | ||
|tss_id_v3=hg_145695.1 | |tss_id_v3=hg_145695.1 | ||
Latest revision as of 09:42, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|DRA000914|PRJNA401781|PRJNA548673|PRJNA615891 |PRJNA4843412|DRA013844|PRJNA597322|PRJDB5282 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|RAMPAGE|ReCappable-seq|SLIC_CAGE|NETCAGE|STRIPE-seq |oligo_capping|C1CAGE|TIF-seq2 | |||||||||||||||
| TSS cluster detected* | 13 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2773038,EH38E1751284) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001286480 |
| Entrez ID: | 9824 |
| Nearest Unigene: | Hs.591130 |
| Nearest Refseq: | NM_014783 |
| Nearest Ensembl: | ENSG00000198826 |
| Gene Name: | Rho GTPase activating protein 11A |
| Gene Alias: | GAP (1-12) |
| Gene Type: | protein-coding |
| CpG%: | 0.048387 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.