TSS: Rfhg 177318.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000359445.7:0 ENST00000268206.12:0 ENST00000561389.1:0 ENST00000557844.1:0 NM_024580.6:0 NM_001322844.2:0 NM_001040610.3:0 NR_136410.2:0 BX538332:0 AK300348:0 AK056656:0 BC014628:10 ENST00000650113.1:22 NM_001322845.2:132 ENST00000558974.1:196 | ||
|annotation=promoter-TSS (NM_001348700) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2817295,EH38E1782900) | |ccre_description=PLS,CTCF-bound (EH38D2817295,EH38E1782900) | ||
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.146067 | |cpg_percent=0.146067 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001348700) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=30 | ||
|end=82262749 | |end=82262749 | ||
|entrez_id= | |entrez_id=79631 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.722222 | |gc_percent=0.722222 | ||
|gene_alias= | |gene_alias=EFTUD1{{!}}FAM42A{{!}}HsT19294{{!}}RIA1{{!}}SDS2 | ||
|gene_description= | |gene_description=elongation factor like GTPase 1 | ||
|gene_id=79631 | |gene_id=79631 | ||
|gene_name=elongation factor like GTPase 1 | |gene_name=elongation factor like GTPase 1 | ||
| Line 19: | Line 20: | ||
|gene_symbol=EFL1 | |gene_symbol=EFL1 | ||
|gene_synonyms=FAM42A FLJ13119 HsT19294 RIA1 | |gene_synonyms=FAM42A FLJ13119 HsT19294 RIA1 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25789 | |hgnc_mgi_id=HGNC:25789 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database{{!}}NETCAGE{{!}}C1CAGE{{!}}TIF-seq2{{!}}SLIC_CAGE{{!}}RAMPAGE{{!}}ReCappable-seq | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000140598 | ||
|nearest_refseq= | |nearest_promoter_id=NM_024580 | ||
|nearest_unigene= | |nearest_refseq=NM_024580 | ||
|nearest_transcripts=BC014628:10 ENST00000650113.1:22 NM_001322845.2:132 ENST00000558974.1:196 | |||
|nearest_unigene=Hs.459114 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}ENCODE{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJNA401781 | |||
|species=human | |species=human | ||
|start= | |start=82262660 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 11:23, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DRA000914|ENCODE|PRJNA4843412|DRA013844 |PRJDB5282|PRJNA615891|PRJNA548673|PRJNA401781 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|NETCAGE|C1CAGE|TIF-seq2|SLIC_CAGE|RAMPAGE |ReCappable-seq | |||||||||||||||
| TSS cluster detected* | 13 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2817295,EH38E1782900) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 30 |
|---|---|
| Nearest PromoterID: | NM_024580 |
| Entrez ID: | 79631 |
| Nearest Unigene: | Hs.459114 |
| Nearest Refseq: | NM_024580 |
| Nearest Ensembl: | ENSG00000140598 |
| Gene Name: | elongation factor like GTPase 1 |
| Gene Alias: | EFTUD1|FAM42A|HsT19294|RIA1|SDS2 |
| Gene Type: | protein-coding |
| CpG%: | 0.146067 |
| GC%: | 0.722222 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.