TSS: Rfhg 179938.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
| | |all_trans=AF161338:-1 LF340600:-10 MA576177:-10 ENST00000570971.2:-15 LF340599:-168 MA576176:-168 LF340598:-235 MA576175:-235 ENST00000575870.5:315 LF340601:346 MA576178:346 | ||
|annotation=exon (NM_016333, exon 3 of 15) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.076923 | |cpg_percent=0.076923 | ||
|detailed_annotation= | |detailed_annotation=exon (NM_016333, exon 3 of 15) | ||
|distance=-1 | |distance=-1 | ||
|distance_to_tss= | |distance_to_tss=4866 | ||
|end=2757517 | |end=2757517 | ||
|entrez_id= | |entrez_id=23524 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.518519 | |gc_percent=0.518519 | ||
|gene_alias= | |gene_alias=300-KD{{!}}CWF21{{!}}Cwc21{{!}}HSPC075{{!}}SRL300{{!}}SRm300 | ||
|gene_description= | |gene_description=serine/arginine repetitive matrix 2 | ||
|gene_id=23524 | |gene_id=23524 | ||
|gene_name=serine/arginine repetitive matrix 2 | |gene_name=serine/arginine repetitive matrix 2 | ||
| Line 19: | Line 20: | ||
|gene_symbol=SRRM2 | |gene_symbol=SRRM2 | ||
|gene_synonyms=Cwc21 KIAA0324 SRL300 SRm300 | |gene_synonyms=Cwc21 KIAA0324 SRL300 SRm300 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:16639 | |hgnc_mgi_id=HGNC:16639 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000167978 | ||
|nearest_refseq= | |nearest_promoter_id=NM_016333 | ||
|nearest_unigene= | |nearest_refseq=NM_016333 | ||
|nearest_transcripts=LF340600:-10 MA576177:-10 ENST00000570971.2:-15 LF340599:-168 MA576176:-168 LF340598:-235 MA576175:-235 ENST00000575870.5:315 LF340601:346 MA576178:346 | |||
|nearest_unigene=Hs.433343 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=2757491 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 12:11, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | 4866 |
|---|---|
| Nearest PromoterID: | NM_016333 |
| Entrez ID: | 23524 |
| Nearest Unigene: | Hs.433343 |
| Nearest Refseq: | NM_016333 |
| Nearest Ensembl: | ENSG00000167978 |
| Gene Name: | serine/arginine repetitive matrix 2 |
| Gene Alias: | 300-KD|CWF21|Cwc21|HSPC075|SRL300|SRm300 |
| Gene Type: | protein-coding |
| CpG%: | 0.076923 |
| GC%: | 0.518519 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.