TSS: Rfhg 182912.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |all_trans= | ||
|annotation=intron (NM_004608, intron 6 of 8) | |||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D2858293,EH38E1811194) | |ccre_description=dELS,CTCF-bound (EH38D2858293,EH38E1811194) | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.018519 | |cpg_percent=0.018519 | ||
|detailed_annotation= | |detailed_annotation=FRAM{{!}}SINE{{!}}Alu | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=4556 | ||
|end=30087355 | |end=30087355 | ||
|entrez_id= | |entrez_id=6911 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.581818 | |gc_percent=0.581818 | ||
|gene_alias= | |gene_alias=SCDO5 | ||
|gene_description= | |gene_description=T-box transcription factor 6 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=NETCAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000149922 | ||
|nearest_refseq= | |nearest_promoter_id=NM_004608 | ||
|nearest_unigene= | |nearest_refseq=NM_004608 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.198301 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412 | |||
|species=human | |species=human | ||
|start= | |start=30087301 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 13:08, 14 March 2025
Basic information about the TSS
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| Source datasets | PRJNA4843412 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D2858293,EH38E1811194) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 4556 |
|---|---|
| Nearest PromoterID: | NM_004608 |
| Entrez ID: | 6911 |
| Nearest Unigene: | Hs.198301 |
| Nearest Refseq: | NM_004608 |
| Nearest Ensembl: | ENSG00000149922 |
| Gene Name: | |
| Gene Alias: | SCDO5 |
| Gene Type: | protein-coding |
| CpG%: | 0.018519 |
| GC%: | 0.581818 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |