TSS: Rfhg 182912.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=TTS (ENST00000553607.1)
|all_trans=
|annotation=intron (NM_004608, intron 6 of 8)
|ccre_category=dELS
|ccre_category=dELS
|ccre_description=dELS,CTCF-bound (EH38D2858293,EH38E1811194)
|ccre_description=dELS,CTCF-bound (EH38D2858293,EH38E1811194)
|chr=chr16
|chr=chr16
|cpg_percent=0.018519
|cpg_percent=0.018519
|detailed_annotation=protein_coding-TTS (ENST00000553607.1)
|detailed_annotation=FRAM{{!}}SINE{{!}}Alu
|distance=
|distance=
|distance_to_tss=3885
|distance_to_tss=4556
|end=30087355
|end=30087355
|entrez_id=ENSG00000149922
|entrez_id=6911
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.581818
|gc_percent=0.581818
|gene_alias=
|gene_alias=SCDO5
|gene_description=
|gene_description=T-box transcription factor 6
|gene_id=
|gene_id=
|gene_name=
|gene_name=
Line 19: Line 20:
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=NETCAGE
|nearest_promoter_id=ENST00000567664.5
|nearest_ensembl=ENSG00000149922
|nearest_refseq=
|nearest_promoter_id=NM_004608
|nearest_unigene=ENST00000553607
|nearest_refseq=NM_004608
|nearest_transcripts=
|nearest_unigene=Hs.198301
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=PRJNA4843412
|species=human
|species=human
|start=30087300
|start=30087301
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 13:08, 14 March 2025

Basic information about the TSS


TSS ID:rfhg_182912.1
Species:human
Chr:chr16
Start:30087301
End:30087355
Strand:+
Source datasetsPRJNA4843412
ProtocolNETCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:dELS,CTCF-bound (EH38D2858293,EH38E1811194)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:4556
    Nearest PromoterID:NM_004608
    Entrez ID:6911
    Nearest Unigene:Hs.198301
    Nearest Refseq:NM_004608
    Nearest Ensembl:ENSG00000149922
    Gene Name:
    Gene Alias:SCDO5
    Gene Type:protein-coding
    CpG%:0.018519
    GC%:0.581818
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):