TSS: Rfhg 183804.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=non-coding (NR_034018, exon 1 of 3) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D2860170,EH38E1812568) | |ccre_description=PLS (EH38D2860170,EH38E1812568) | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=non-coding (NR_034018, exon 1 of 3) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=708 | ||
|end=35506466 | |end=35506466 | ||
|entrez_id= | |entrez_id=100130700 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.625000 | |gc_percent=0.625000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=TP53 target 3 family member H, pseudogene | ||
|gene_id=100130700 | |gene_id=100130700 | ||
|gene_name= | |gene_name=TP53TG3HP | ||
|gene_source=HGNC:51819 | |gene_source=HGNC:51819 | ||
|gene_symbol=TP53TG3HP | |gene_symbol=TP53TG3HP | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=pseudo | ||
|hgnc_mgi_id=HGNC:51819 | |hgnc_mgi_id=HGNC:51819 | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_034018 | ||
|nearest_refseq= | |nearest_refseq=NR_034018 | ||
|nearest_unigene= | |nearest_unigene=Hs.97712 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=35506459 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= |
Latest revision as of 16:26, 7 December 2023
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS (EH38D2860170,EH38E1812568) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 708 |
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Nearest PromoterID: | NR_034018 |
Entrez ID: | 100130700 |
Nearest Unigene: | Hs.97712 |
Nearest Refseq: | NR_034018 |
Nearest Ensembl: | |
Gene Name: | TP53TG3HP |
Gene Alias: | - |
Gene Description: | TP53 target 3 family member H, pseudogene |
Gene Type: | pseudo |
CpG%: | 0.000000 |
GC%: | 0.625000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.