TSS: Rfhg 185678.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000542274.5) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D2878074,EH38E1824006) |chr=chr16 |cpg_percent=0.000000 |...") |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001317196) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D2878074,EH38E1824006) | |ccre_description=pELS,CTCF-bound (EH38D2878074,EH38E1824006) | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001317196) | ||
|distance=12 | |distance=12 | ||
|distance_to_tss= | |distance_to_tss=52 | ||
|end=68645365 | |end=68645365 | ||
|entrez_id= | |entrez_id=1001 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.571429 | |gc_percent=0.571429 | ||
|gene_alias= | |gene_alias=CDHP{{!}}HJMD{{!}}PCAD | ||
|gene_description= | |gene_description=cadherin 3 | ||
|gene_id=1001 | |gene_id=1001 | ||
|gene_name= | |gene_name=CDH3 | ||
|gene_source=HGNC:1762 | |gene_source=HGNC:1762 | ||
|gene_symbol=CDH3 | |gene_symbol=CDH3 | ||
|gene_synonyms=CDHP PCAD | |gene_synonyms=CDHP PCAD | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:1762 | |hgnc_mgi_id=HGNC:1762 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000062038 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001793 | ||
|nearest_unigene= | |nearest_refseq=NM_001793 | ||
|nearest_unigene=Hs.191842 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=68645359 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 17:01, 7 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2878074,EH38E1824006) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 52 |
|---|---|
| Nearest PromoterID: | NM_001793 |
| Entrez ID: | 1001 |
| Nearest Unigene: | Hs.191842 |
| Nearest Refseq: | NM_001793 |
| Nearest Ensembl: | ENSG00000062038 |
| Gene Name: | CDH3 |
| Gene Alias: | CDHP|HJMD|PCAD |
| Gene Description: | cadherin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.571429 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.