TSS: Rfhg 186469.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000633875.3) |ccre_category=DNase-H3K4me3 |ccre_description=DNase-H3K4me3 (EH38D2884025,EH38E1828422) |chr=chr16 |cpg_percent=0.0...") |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001351307) | ||
|ccre_category=DNase-H3K4me3 | |ccre_category=DNase-H3K4me3 | ||
|ccre_description=DNase-H3K4me3 (EH38D2884025,EH38E1828422) | |ccre_description=DNase-H3K4me3 (EH38D2884025,EH38E1828422) | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001351307) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=0 | ||
|end=75701463 | |end=75701463 | ||
|entrez_id= | |entrez_id=100033411 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=double homeobox B | ||
|gene_id=100033411 | |gene_id=100033411 | ||
|gene_name= | |gene_name=DUXB | ||
|gene_source=HGNC:33345 | |gene_source=HGNC:33345 | ||
|gene_symbol=DUXB | |gene_symbol=DUXB | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:33345 | |hgnc_mgi_id=HGNC:33345 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000282757 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001351307 | ||
|nearest_unigene= | |nearest_refseq=NM_001351307 | ||
|nearest_unigene= | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=75701460 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 17:15, 7 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | DNase-H3K4me3 (EH38D2884025,EH38E1828422) |
|---|---|
| Category: | DNase-H3K4me3 |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001351307 |
| Entrez ID: | 100033411 |
| Nearest Unigene: | |
| Nearest Refseq: | NM_001351307 |
| Nearest Ensembl: | ENSG00000282757 |
| Gene Name: | DUXB |
| Gene Alias: | - |
| Gene Description: | double homeobox B |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.