TSS: Rfhg 189368.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_136403) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2906081,EH38E1844523) | |ccre_description=PLS,CTCF-bound (EH38D2906081,EH38E1844523) | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.058824 | |cpg_percent=0.058824 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_136403) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-15 | ||
|end=7583863 | |end=7583863 | ||
|entrez_id= | |entrez_id=9526 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=CDGIF{{!}}HBEBP2BPA{{!}}Lec35{{!}}My008{{!}}PP3958{{!}}PQLC5{{!}}SL15{{!}}SLC66A5 | ||
|gene_description= | |gene_description=mannose-P-dolichol utilization defect 1 | ||
|gene_id=9526 | |gene_id=9526 | ||
|gene_name= | |gene_name=MPDU1 | ||
|gene_source=HGNC:7207 | |gene_source=HGNC:7207 | ||
|gene_symbol=MPDU1 | |gene_symbol=MPDU1 | ||
|gene_synonyms=CDGIf Lec35 PQLC5 SL15 SLC66A5 | |gene_synonyms=CDGIf Lec35 PQLC5 SL15 SLC66A5 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:7207 | |hgnc_mgi_id=HGNC:7207 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database{{!}}TSS-seq{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}C1CAGE{{!}}NETCAGE{{!}}RAMPAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000129255 | ||
|nearest_refseq= | |nearest_promoter_id=NM_004870 | ||
|nearest_unigene= | |nearest_refseq=NM_004870 | ||
|nearest_unigene=Hs.246381 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DBTSS{{!}}DRA000914{{!}}ENCODE{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start= | |start=7583812 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000571822.5 ENST00000396501.8 ENST00000571391.5 ENST00000578267.5 ENST00000585188.5 ENST00000359822.10 ENST00000580708.5 ENST00000580834.5 ENST00000572836.5 ENST00000577088.5 ENST00000250124.11 ENST00000584378.5 ENST00000423172.6 ENST00000576066.5 ENST00000584479.5 ENST00000572719.5 ENST00000579445.5 BC001898 AK225401 AK075299 AF038961 AK027742 AK297691 AK314527 AK297001 AK225432 AK055923 AK300083 AK300140 CU674920 HQ448685 KR709838 KR709839 KR709840 KU178478 KU178479 KU178480 DQ499597 | |transcript_name=ENST00000571822.5 ENST00000396501.8 ENST00000571391.5 ENST00000578267.5 ENST00000585188.5 ENST00000359822.10 ENST00000580708.5 ENST00000580834.5 ENST00000572836.5 ENST00000577088.5 ENST00000250124.11 ENST00000584378.5 ENST00000423172.6 ENST00000576066.5 ENST00000584479.5 ENST00000572719.5 ENST00000579445.5 BC001898 AK225401 AK075299 AF038961 AK027742 AK297691 AK314527 AK297001 AK225432 AK055923 AK300083 AK300140 CU674920 HQ448685 KR709838 KR709839 KR709840 KU178478 KU178479 KU178480 DQ499597 | ||
|tss_cluster_detected=15 | |||
|tss_id=rfhg_189368.1 | |tss_id=rfhg_189368.1 | ||
|tss_id_v3=hg_159281.1 | |tss_id_v3=hg_159281.1 |
Latest revision as of 18:10, 7 December 2023
Basic information about the TSS
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Source datasets | FANTOM5|EPD|DBTSS|DRA000914|ENCODE|PRJNA401781|PRJNA548673 |PRJNA615891|PRJDB5282|PRJNA4843412|DRA013844 | |||||||||||||||
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Protocol | CAGE|TSS_database|TSS-seq|oligo_capping|ReCappable-seq |SLIC_CAGE|TIF-seq2|C1CAGE|NETCAGE|RAMPAGE | |||||||||||||||
TSS cluster detected* | 15 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D2906081,EH38E1844523) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -15 |
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Nearest PromoterID: | NM_004870 |
Entrez ID: | 9526 |
Nearest Unigene: | Hs.246381 |
Nearest Refseq: | NM_004870 |
Nearest Ensembl: | ENSG00000129255 |
Gene Name: | MPDU1 |
Gene Alias: | CDGIF|HBEBP2BPA|Lec35|My008|PP3958|PQLC5|SL15|SLC66A5 |
Gene Description: | mannose-P-dolichol utilization defect 1 |
Gene Type: | protein-coding |
CpG%: | 0.058824 |
GC%: | 0.500000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.