TSS: Rfhg 190732.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000314728.9) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2915843,EH38E1851265) |chr=chr17 |cpg_percent=0.000000 |de...")
 
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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000314728.9)
|all_trans=ENST00000395628.6:-1 AK024115:-1 ENST00000582659.5:-2 ENST00000583197.5:-2 ENST00000577692.5:-2 ENST00000580579.5:-2 ENST00000395618.7:-2 AK092366:-2 BC070036:14 AB028988:14 ENST00000582234.5:18 ENST00000494192.6:18 ENST00000575595.5:18 AK298006:18 AK295652:18 ENST00000347697.6:-21 ENST00000581024.5:21 AK307455:21 ENST00000577244.5:31 NM_001102664.2:-32 NM_148921.4:-32 NM_014964.5:-32 BC015488:32 ENST00000314728.9:-57 ENST00000582969.5:99 ENST00000441293.2:-310 ENST00000584633.1:-322
|annotation=promoter-TSS (NM_148921)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2915843,EH38E1851265)
|ccre_description=PLS,CTCF-bound (EH38D2915843,EH38E1851265)
|chr=chr17
|chr=chr17
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000314728.9)
|detailed_annotation=promoter-TSS (NM_148921)
|distance=-1
|distance=-1
|distance_to_tss=1
|distance_to_tss=21
|end=19237398
|end=19237398
|entrez_id=ENSG00000072134
|entrez_id=22905
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=1.000000
|gc_percent=1.000000
|gene_alias=
|gene_alias=EHB21
|gene_description=
|gene_description=epsin 2
|gene_id=22905
|gene_id=22905
|gene_name=epsin 2
|gene_name=epsin 2
Line 19: Line 20:
|gene_symbol=EPN2
|gene_symbol=EPN2
|gene_synonyms=EHB21 KIAA1065
|gene_synonyms=EHB21 KIAA1065
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:18639
|hgnc_mgi_id=HGNC:18639
|nearest_ensembl=
|methods=TSS_database
|nearest_promoter_id=ENST00000395628.6
|nearest_ensembl=ENSG00000072134
|nearest_refseq=
|nearest_promoter_id=NM_148921
|nearest_unigene=ENST00000395620
|nearest_refseq=NM_014964
|nearest_transcripts=ENST00000582659.5:-2 ENST00000583197.5:-2 ENST00000577692.5:-2 ENST00000580579.5:-2 ENST00000395618.7:-2 AK092366:-2 BC070036:14 AB028988:14 ENST00000582234.5:18 ENST00000494192.6:18 ENST00000575595.5:18 AK298006:18 AK295652:18 ENST00000347697.6:-21 ENST00000581024.5:21 AK307455:21 ENST00000577244.5:31 NM_001102664.2:-32 NM_148921.4:-32 NM_014964.5:-32 BC015488:32 ENST00000314728.9:-57 ENST00000582969.5:99 ENST00000441293.2:-310 ENST00000584633.1:-322
|nearest_unigene=Hs.743983
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=EPD
|species=human
|species=human
|start=19237397
|start=19237398
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 15:34, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_190732.1
Species:human
Chr:chr17
Start:19237398
End:19237398
Strand:+
Source datasetsEPD
ProtocolTSS_database
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2915843,EH38E1851265)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000395628.6:-1
AK024115:-1
GeneID:22905
HGNC/MGI_ID:HGNC:18639
UniProt_ID:F6PQP6
Nearer transcript ids and distances:
  • ENST00000582659.5:-2
  • ENST00000583197.5:-2
  • ENST00000577692.5:-2
  • ENST00000580579.5:-2
  • ENST00000395618.7:-2
  • AK092366:-2
  • BC070036:14
  • AB028988:14
  • ENST00000582234.5:18
  • ENST00000494192.6:18
  • ENST00000575595.5:18
  • AK298006:18
  • AK295652:18
  • ENST00000347697.6:-21
  • ENST00000581024.5:21
  • AK307455:21
  • ENST00000577244.5:31
  • NM_001102664.2:-32
  • NM_148921.4:-32
  • NM_014964.5:-32
  • BC015488:32
  • ENST00000314728.9:-57
  • ENST00000582969.5:99
  • ENST00000441293.2:-310
  • ENST00000584633.1:-322
view more...
Gene_name:epsin 2
Gene_symbol:EPN2
Gene_synonyms:EHB21 KIAA1065
Gene_source:HGNC:18639



TATA-Box annotation

Distance to TSS:21
Nearest PromoterID:NM_148921
Entrez ID:22905
Nearest Unigene:Hs.743983
Nearest Refseq:NM_014964
Nearest Ensembl:ENSG00000072134
Gene Name:epsin 2
Gene Alias:EHB21
Gene Type:protein-coding
CpG%:0.000000
GC%:1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "ENST00000582659.5:-2 ENST00000583197.5:-2 ENST00000577692.5:-2 ENST00000580579.5:-2 ENST00000395618.7:-2 AK092366:-2 BC070036:14 AB028988:14 ENST00000582234.5:18 ENST00000494192.6:18 ENST00000575595.5:18 AK298006:18 AK295652:18 ENST00000347697.6:-21 ENST00000581024.5:21 AK307455:21 ENST00000577244.5:31 NM_001102664.2:-32 NM_148921.4:-32 NM_014964.5:-32 BC015488:32 ENST00000314728.9:-57 ENST00000582969.5:99 ENST00000441293.2:-310 ENST00000584633.1:-322" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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