TSS: Rfhg 190737.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
| | |all_trans=BC051793:6 AB463028:19 AF062084:19 AF062085:19 KJ904677:23 ENST00000571254.1:-40 BC093972:-40 BC093974:-40 BC143263:-40 BC143264:-40 ENST00000395626.5:-108 AK001491:-108 AK001996:-134 | ||
|annotation=5' UTR (NM_148921, exon 3 of 10) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=5' UTR (NM_148921, exon 3 of 10) | ||
|distance=6 | |distance=6 | ||
|distance_to_tss= | |distance_to_tss=11701 | ||
|end=19283101 | |end=19283101 | ||
|entrez_id= | |entrez_id=100874309 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.333333 | |gc_percent=0.333333 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=EPN2 intronic transcript 1 | ||
|gene_id=22905 | |gene_id=22905 | ||
|gene_name=epsin 2 | |gene_name=epsin 2 | ||
| Line 19: | Line 20: | ||
|gene_symbol=EPN2 | |gene_symbol=EPN2 | ||
|gene_synonyms=EHB21 KIAA1065 | |gene_synonyms=EHB21 KIAA1065 | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:18639 | |hgnc_mgi_id=HGNC:18639 | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_046824 | ||
|nearest_refseq= | |nearest_refseq=NR_046824 | ||
|nearest_unigene= | |nearest_transcripts=AB463028:19 AF062084:19 AF062085:19 KJ904677:23 ENST00000571254.1:-40 BC093972:-40 BC093974:-40 BC143263:-40 BC143264:-40 ENST00000395626.5:-108 AK001491:-108 AK001996:-134 | ||
|nearest_unigene=Hs.733657 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=19283087 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 15:34, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | 11701 |
|---|---|
| Nearest PromoterID: | NR_046824 |
| Entrez ID: | 100874309 |
| Nearest Unigene: | Hs.733657 |
| Nearest Refseq: | NR_046824 |
| Nearest Ensembl: | |
| Gene Name: | epsin 2 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.