TSS: Rfhg 192026.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |all_trans=ENST00000582017.1:417 M26683:417 BT007329:-435 AB463485:-436 KJ892101:-437 KJ905313:-437 DQ893725:-442 EU176175:-442 LF326991:451 MA562568:451 S69738:-466 M28226:-481 X14768:-488 S71513:-488 BC009716:-491 ENST00000580907.5:-500 ENST00000225831.4:-500 NM_002982.4:-500 AK311308:-500 AK311960:-500 | ||
|annotation=intron (NM_002982, intron 1 of 2) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_002982, intron 1 of 2) | ||
|distance=417 | |distance=417 | ||
|distance_to_tss= | |distance_to_tss=503 | ||
|end=34255791 | |end=34255791 | ||
|entrez_id= | |entrez_id=6347 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.285714 | |gc_percent=0.285714 | ||
|gene_alias= | |gene_alias=GDCF-2{{!}}HC11{{!}}HSMCR30{{!}}MCAF{{!}}MCP-1{{!}}MCP1{{!}}SCYA2{{!}}SMC-CF | ||
|gene_description= | |gene_description=C-C motif chemokine ligand 2 | ||
|gene_id=6347 | |gene_id=6347 | ||
|gene_name=C-C motif chemokine ligand 2 | |gene_name=C-C motif chemokine ligand 2 | ||
| Line 19: | Line 20: | ||
|gene_symbol=CCL2 | |gene_symbol=CCL2 | ||
|gene_synonyms=GDCF-2 HC11 MCAF MCP-1 MCP1 MGC9434 SMC-CF | |gene_synonyms=GDCF-2 HC11 MCAF MCP-1 MCP1 MGC9434 SMC-CF | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:10618 | |hgnc_mgi_id=HGNC:10618 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000108691 | ||
|nearest_refseq= | |nearest_promoter_id=NM_002982 | ||
|nearest_unigene= | |nearest_refseq=NM_002982 | ||
|nearest_transcripts=BT007329:-435 AB463485:-436 KJ892101:-437 KJ905313:-437 DQ893725:-442 EU176175:-442 LF326991:451 MA562568:451 S69738:-466 M28226:-481 X14768:-488 S71513:-488 BC009716:-491 ENST00000580907.5:-500 ENST00000225831.4:-500 NM_002982.4:-500 AK311308:-500 AK311960:-500 | |||
|nearest_unigene=Hs.303649 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=34255785 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 15:58, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 503 |
|---|---|
| Nearest PromoterID: | NM_002982 |
| Entrez ID: | 6347 |
| Nearest Unigene: | Hs.303649 |
| Nearest Refseq: | NM_002982 |
| Nearest Ensembl: | ENSG00000108691 |
| Gene Name: | C-C motif chemokine ligand 2 |
| Gene Alias: | GDCF-2|HC11|HSMCR30|MCAF|MCP-1|MCP1|SCYA2|SMC-CF |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.285714 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.
Property "Nearest transcripts" (as page type) with input value "BT007329:-435 AB463485:-436 KJ892101:-437 KJ905313:-437 DQ893725:-442 EU176175:-442 LF326991:451 MA562568:451 S69738:-466 M28226:-481 X14768:-488 S71513:-488 BC009716:-491 ENST00000580907.5:-500 ENST00000225831.4:-500 NM_002982.4:-500 AK311308:-500 AK311960:-500" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.