TSS: Rfhg 198305.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=EF137868:8 ENST00000375352.1:-44 NM_001115152.2:-44 AY358148:-44 | ||
|annotation=promoter-TSS (NM_001115152) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001115152) | ||
|distance=8 | |distance=8 | ||
|distance_to_tss=44 | |distance_to_tss=44 | ||
|end=74592239 | |end=74592239 | ||
|entrez_id= | |entrez_id=100131439 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.000000 | |gc_percent=0.000000 | ||
|gene_alias= | |gene_alias=CD300D{{!}}CLM-4{{!}}CMRF35-A4{{!}}CMRF35A4 | ||
|gene_description= | |gene_description=CD300 molecule like family member d | ||
|gene_id=100131439 | |gene_id=100131439 | ||
|gene_name=CD300 molecule like family member d | |gene_name=CD300 molecule like family member d | ||
| Line 19: | Line 20: | ||
|gene_symbol=CD300LD | |gene_symbol=CD300LD | ||
|gene_synonyms=CD300D CMRF35A4 | |gene_synonyms=CD300D CMRF35A4 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:16848 | |hgnc_mgi_id=HGNC:16848 | ||
|nearest_ensembl= | |methods=TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000204345 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001115152 | ||
|nearest_unigene= | |nearest_refseq=NM_001115152 | ||
|nearest_transcripts=ENST00000375352.1:-44 NM_001115152.2:-44 AY358148:-44 | |||
|nearest_unigene=Hs.531099 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start= | |start=74592239 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 17:57, 14 March 2025
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_001115152 |
| Entrez ID: | 100131439 |
| Nearest Unigene: | Hs.531099 |
| Nearest Refseq: | NM_001115152 |
| Nearest Ensembl: | ENSG00000204345 |
| Gene Name: | CD300 molecule like family member d |
| Gene Alias: | CD300D|CLM-4|CMRF35-A4|CMRF35A4 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.