TSS: Rfhg 19929.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000359162.6)
|all_trans=NM_001243505.2:45 ENST00000673908.1:63 ENST00000361525.7:224 ENST00000471371.5:233 BX649009:233 AK291028:249 NM_001350123.2:251 NM_206594.3:251 NM_206595.3:251 NM_001243506.2:251 ENST00000459825.1:256 AK298851:257 ENST00000359162.6:264 AF058291:264
|annotation=promoter-TSS (NM_001243505)
|ccre_category=pELS
|ccre_category=pELS
|ccre_description=pELS,CTCF-bound (EH38D2276961,EH38E1422568)
|ccre_description=pELS,CTCF-bound (EH38D2276961,EH38E1422568)
|chr=chr1
|chr=chr1
|cpg_percent=0.083333
|cpg_percent=0.083333
|detailed_annotation=protein_coding-promoter-TSS (ENST00000359162.6)
|detailed_annotation=promoter-TSS (NM_001243505)
|distance=45
|distance=45
|distance_to_tss=-230
|distance_to_tss=-51
|end=217089881
|end=217089881
|entrez_id=ENSG00000196482
|entrez_id=2104
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.692308
|gc_percent=0.692308
|gene_alias=
|gene_alias=ERR-gamma{{!}}ERR3{{!}}ERRg{{!}}ERRgamma{{!}}NR3B3
|gene_description=
|gene_description=estrogen related receptor gamma
|gene_id=
|gene_id=
|gene_name=
|gene_name=
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|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000361525.7
|nearest_ensembl=ENSG00000196482
|nearest_refseq=
|nearest_promoter_id=NM_001243505
|nearest_unigene=ENST00000391890
|nearest_refseq=NM_001438
|nearest_transcripts=ENST00000673908.1:63 ENST00000361525.7:224 ENST00000471371.5:233 BX649009:233 AK291028:249 NM_001350123.2:251 NM_206594.3:251 NM_206595.3:251 NM_001243506.2:251 ENST00000459825.1:256 AK298851:257 ENST00000359162.6:264 AF058291:264
|nearest_unigene=Hs.444225
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=217089868
|start=217089869
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 18:17, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_19929.1
Species:human
Chr:chr1
Start:217089869
End:217089881
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS,CTCF-bound (EH38D2276961,EH38E1422568)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:NM_001243505.2:45
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000673908.1:63
  • ENST00000361525.7:224
  • ENST00000471371.5:233
  • BX649009:233
  • AK291028:249
  • NM_001350123.2:251
  • NM_206594.3:251
  • NM_206595.3:251
  • NM_001243506.2:251
  • ENST00000459825.1:256
  • AK298851:257
  • ENST00000359162.6:264
  • AF058291:264
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-51
Nearest PromoterID:NM_001243505
Entrez ID:2104
Nearest Unigene:Hs.444225
Nearest Refseq:NM_001438
Nearest Ensembl:ENSG00000196482
Gene Name:
Gene Alias:ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3
Gene Type:protein-coding
CpG%:0.083333
GC%:0.692308
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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