TSS: Rfhg 200969.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=NM_001374396.1:0 ENST00000549780.5:17 | ||
|annotation=promoter-TSS (NM_001278682) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D2975913,EH38E1895933) | |ccre_description=pELS,CTCF-bound (EH38D2975913,EH38E1895933) | ||
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.035088 | |cpg_percent=0.035088 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001278682) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=911 | ||
|end=3448482 | |end=3448482 | ||
|entrez_id= | |entrez_id=7050 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.620690 | |gc_percent=0.620690 | ||
|gene_alias= | |gene_alias=HPE4{{!}}TGIF | ||
|gene_description= | |gene_description=TGFB induced factor homeobox 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
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|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE{{!}}NETCAGE{{!}}SLIC_CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000177426 | ||
|nearest_refseq= | |nearest_promoter_id=NM_173207 | ||
|nearest_unigene= | |nearest_refseq=NM_003244 | ||
|nearest_transcripts=ENST00000549780.5:17 | |||
|nearest_unigene=Hs.373550 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA615891 | |||
|species=human | |species=human | ||
|start= | |start=3448425 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=NM_001374396.1 | |transcript_name=NM_001374396.1 | ||
|tss_cluster_detected=4 | |||
|tss_id=rfhg_200969.1 | |tss_id=rfhg_200969.1 | ||
|tss_id_v3=hg_169174.1;hg_169175.1 | |tss_id_v3=hg_169174.1;hg_169175.1 | ||
Latest revision as of 18:48, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|PRJNA4843412|DRA013844|PRJNA615891 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|NETCAGE|SLIC_CAGE | |||||||||||||||
| TSS cluster detected* | 4 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2975913,EH38E1895933) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 911 |
|---|---|
| Nearest PromoterID: | NM_173207 |
| Entrez ID: | 7050 |
| Nearest Unigene: | Hs.373550 |
| Nearest Refseq: | NM_003244 |
| Nearest Ensembl: | ENSG00000177426 |
| Gene Name: | |
| Gene Alias: | HPE4|TGIF |
| Gene Type: | protein-coding |
| CpG%: | 0.035088 |
| GC%: | 0.620690 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |