TSS: Rfhg 204383.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000343998.8:0 NM_001044369.3:0 LF344108:-142 MA579685:-142 LF213428:147 MA449005:147 LF344107:-358 MA579684:-358 LF212750:-500 MA448327:-500 | ||
|annotation=promoter-TSS (NM_001044369) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D3025000,EH38E1926662) | |ccre_description=PLS (EH38D3025000,EH38E1926662) | ||
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.161290 | |cpg_percent=0.161290 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001044369) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=-66 | |distance_to_tss=-66 | ||
|end=74457365 | |end=74457365 | ||
|entrez_id= | |entrez_id=125704 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.761905 | |gc_percent=0.761905 | ||
|gene_alias= | |gene_alias=C18orf51{{!}}FAM69C | ||
|gene_description= | |gene_description=divergent protein kinase domain 1C | ||
|gene_id=125704 | |gene_id=125704 | ||
|gene_name=divergent protein kinase domain 1C | |gene_name=divergent protein kinase domain 1C | ||
| Line 19: | Line 20: | ||
|gene_symbol=DIPK1C | |gene_symbol=DIPK1C | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:31729 | |hgnc_mgi_id=HGNC:31729 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000187773 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001044369 | ||
|nearest_unigene= | |nearest_refseq=NM_001044369 | ||
|nearest_transcripts=LF344108:-142 MA579685:-142 LF213428:147 MA449005:147 LF344107:-358 MA579684:-358 LF212750:-500 MA448327:-500 | |||
|nearest_unigene=Hs.371690 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=74457303 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 19:54, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D3025000,EH38E1926662) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -66 |
|---|---|
| Nearest PromoterID: | NM_001044369 |
| Entrez ID: | 125704 |
| Nearest Unigene: | Hs.371690 |
| Nearest Refseq: | NM_001044369 |
| Nearest Ensembl: | ENSG00000187773 |
| Gene Name: | divergent protein kinase domain 1C |
| Gene Alias: | C18orf51|FAM69C |
| Gene Type: | protein-coding |
| CpG%: | 0.161290 |
| GC%: | 0.761905 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.