TSS: Rfhg 207885.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000340180.5)
|all_trans=KJ892410:11 EU446913:12 ENST00000340180.5:-47 BC051309:-47 ENST00000445911.5:-84 ENST00000429654.7:-120 NM_001364731.1:-120 NM_001364730.1:-120 NM_021915.4:-120 NM_001321163.2:-120
|annotation=5' UTR (NM_001364730, exon 1 of 4)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D3042134,EH38E1939500)
|ccre_description=PLS,CTCF-bound (EH38D3042134,EH38E1939500)
|chr=chr19
|chr=chr19
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000340180.5)
|detailed_annotation=5' UTR (NM_001364730, exon 1 of 4)
|distance=11
|distance=11
|distance_to_tss=52
|distance_to_tss=125
|end=11887912
|end=11887912
|entrez_id=ENSG00000198429
|entrez_id=7620
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.545455
|gc_percent=0.545455
|gene_alias=
|gene_alias=Cos5{{!}}hZNF3
|gene_description=
|gene_description=zinc finger protein 69
|gene_id=
|gene_id=
|gene_name=
|gene_name=
Line 19: Line 20:
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000340180.5
|nearest_ensembl=ENSG00000198429
|nearest_refseq=
|nearest_promoter_id=NM_001321163
|nearest_unigene=ENST00000445911
|nearest_refseq=NM_021915
|nearest_transcripts=EU446913:12 ENST00000340180.5:-47 BC051309:-47 ENST00000445911.5:-84 ENST00000429654.7:-120 NM_001364731.1:-120 NM_001364730.1:-120 NM_021915.4:-120 NM_001321163.2:-120
|nearest_unigene=Hs.565280
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=11887901
|start=11887902
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 21:02, 14 March 2025

Basic information about the TSS


TSS ID:rfhg_207885.1
Species:human
Chr:chr19
Start:11887902
End:11887912
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D3042134,EH38E1939500)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:KJ892410:11
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • EU446913:12
  • ENST00000340180.5:-47
  • BC051309:-47
  • ENST00000445911.5:-84
  • ENST00000429654.7:-120
  • NM_001364731.1:-120
  • NM_001364730.1:-120
  • NM_021915.4:-120
  • NM_001321163.2:-120
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:125
Nearest PromoterID:NM_001321163
Entrez ID:7620
Nearest Unigene:Hs.565280
Nearest Refseq:NM_021915
Nearest Ensembl:ENSG00000198429
Gene Name:
Gene Alias:Cos5|hZNF3
Gene Type:protein-coding
CpG%:0.000000
GC%:0.545455
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):