TSS: Rfhg 207887.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000592625.5:0 ENST00000358987.8:0 ENST00000586494.1:0 ENST00000343949.9:0 NM_001367174.2:0 NM_001367172.2:0 NM_001012753.2:0 NM_001367173.2:0 AK299224:0 AK092240:0 BC105711:17 BC105712:17 BC105713:17 | ||
|annotation=promoter-TSS (NM_001367174) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3042178,EH38E1939531) | |ccre_description=PLS,CTCF-bound (EH38D3042178,EH38E1939531) | ||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.057143 | |cpg_percent=0.057143 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001367174) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=7 | ||
|end=11965065 | |end=11965065 | ||
|entrez_id= | |entrez_id=284390 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.583333 | |gc_percent=0.583333 | ||
|gene_alias= | |gene_alias=ZNF{{!}}ZNF440L | ||
|gene_description= | |gene_description=zinc finger protein 763 | ||
|gene_id=284390 | |gene_id=284390 | ||
|gene_name=zinc finger protein 763 | |gene_name=zinc finger protein 763 | ||
| Line 19: | Line 20: | ||
|gene_symbol=ZNF763 | |gene_symbol=ZNF763 | ||
|gene_synonyms=ZNF440L | |gene_synonyms=ZNF440L | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:27614 | |hgnc_mgi_id=HGNC:27614 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000197054 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001367172 | ||
|nearest_unigene= | |nearest_refseq=NM_001012753 | ||
|nearest_transcripts=BC105711:17 BC105712:17 BC105713:17 | |||
|nearest_unigene=Hs.646386 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=human | |species=human | ||
|start= | |start=11965030 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 21:02, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3042178,EH38E1939531) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 7 |
|---|---|
| Nearest PromoterID: | NM_001367172 |
| Entrez ID: | 284390 |
| Nearest Unigene: | Hs.646386 |
| Nearest Refseq: | NM_001012753 |
| Nearest Ensembl: | ENSG00000197054 |
| Gene Name: | zinc finger protein 763 |
| Gene Alias: | ZNF|ZNF440L |
| Gene Type: | protein-coding |
| CpG%: | 0.057143 |
| GC%: | 0.583333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.