TSS: Hg 101678.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=6827 |entrez_id=55357 |gc_percent=0.402985 |gene_alias=PARIS-1|PARIS1|TBC1D2A |gene_description=TBC1 domain family member 2 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
|PARIS1= | |||
|TBC1D2A= | |||
|chr=chr9 | |||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance_to_tss= | |distance=NA | ||
|distance_to_tss=6755 | |||
|end=98248909 | |||
|end_of_center_position=98248895 | |||
|entrez_id=55357 | |entrez_id=55357 | ||
|gc_percent=0.402985 | |gc_percent=0.402985 | ||
|gene_alias=PARIS-1 | |gene_alias=PARIS-1{{!}}PARIS1{{!}}TBC1D2A | ||
|gene_description=TBC1 domain family member 2 | |gene_description=TBC1 domain family member 2 | ||
|gene_name=TBC1D2 | |gene_name=TBC1D2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000095383 | |nearest_ensembl=ENSG00000095383 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_051978 | ||
|nearest_refseq=NM_018421 | |nearest_refseq=NM_018421 | ||
|nearest_unigene=Hs.371016 | |nearest_unigene=Hs.371016 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=98248879 | |||
|start_of_center_position=98248894 | |||
|strand=- | |||
|tata_box=-27(CTGCTTTTAAGG,-,0.00),-25(GCTTTTAAGGAT,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101678.1 | |tss_id=hg_101678.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 16:45, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 6755 |
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Nearest PromoterID: | NR_051978 |
Entrez ID: | 55357 |
Nearest Unigene: | Hs.371016 |
Nearest Refseq: | NM_018421 |
Nearest Ensembl: | ENSG00000095383 |
Gene Name: | TBC1D2 |
Gene Alias: | PARIS-1|PARIS1|TBC1D2A |
Gene Description: | TBC1 domain family member 2 |
Gene Type: | protein-coding |
CpG%: | 0.02 |
GC%: | 0.402985 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -27(CTGCTTTTAAGG,-,0.00),-25(GCTTTTAAGGAT,+,0.00) |