TSS: Rfhg 220460.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000619304.4) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D3298382,EH38E2111958) |chr=chr20 |cpg_percent=0.130435 |de...") |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_030919) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3298382,EH38E2111958) | |ccre_description=PLS,CTCF-bound (EH38D3298382,EH38E2111958) | ||
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.130435 | |cpg_percent=0.130435 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_030919) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-5 | ||
|end=38926424 | |end=38926424 | ||
|entrez_id= | |entrez_id=81610 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.625000 | |gc_percent=0.625000 | ||
|gene_alias= | |gene_alias=C20orf129{{!}}CHICA{{!}}dJ616B8.3 | ||
|gene_description= | |gene_description=family with sequence similarity 83 member D | ||
|gene_id=81610 | |gene_id=81610 | ||
|gene_name= | |gene_name=FAM83D | ||
|gene_source=HGNC:16122 | |gene_source=HGNC:16122 | ||
|gene_symbol=FAM83D | |gene_symbol=FAM83D | ||
|gene_synonyms=CHICA dJ616B8.3 | |gene_synonyms=CHICA dJ616B8.3 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:16122 | |hgnc_mgi_id=HGNC:16122 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database{{!}}NETCAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2 | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000101447 | ||
|nearest_refseq= | |nearest_promoter_id=NM_030919 | ||
|nearest_unigene= | |nearest_refseq=NM_030919 | ||
|nearest_unigene=Hs.726442 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}ENCODE{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891 | |||
|species=human | |species=human | ||
|start= | |start=38926401 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000619850.2 AK303860 | |transcript_name=ENST00000619850.2 AK303860 | ||
|tss_cluster_detected=10 | |||
|tss_id=rfhg_220460.1 | |tss_id=rfhg_220460.1 | ||
|tss_id_v3=hg_184599.1 | |tss_id_v3=hg_184599.1 |
Latest revision as of 03:45, 8 December 2023
Basic information about the TSS
|
| |||||||||||||||
Source datasets | FANTOM5|EPD|ENCODE|PRJNA4843412|DRA013844|PRJNA401781 |PRJNA548673|PRJNA615891 | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Protocol | CAGE|TSS_database|NETCAGE|ReCappable-seq|SLIC_CAGE|TIF-seq2 | |||||||||||||||
TSS cluster detected* | 10 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D3298382,EH38E2111958) |
---|---|
Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | -5 |
---|---|
Nearest PromoterID: | NM_030919 |
Entrez ID: | 81610 |
Nearest Unigene: | Hs.726442 |
Nearest Refseq: | NM_030919 |
Nearest Ensembl: | ENSG00000101447 |
Gene Name: | FAM83D |
Gene Alias: | C20orf129|CHICA|dJ616B8.3 |
Gene Description: | family with sequence similarity 83 member D |
Gene Type: | protein-coding |
CpG%: | 0.130435 |
GC%: | 0.625000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.