TSS: Rfhg 221178.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_080752) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3303988,EH38E2115746) | |ccre_description=PLS,CTCF-bound (EH38D3303988,EH38E2115746) | ||
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.063492 | |cpg_percent=0.063492 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_080752) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=7 | ||
|end=45857417 | |end=45857417 | ||
|entrez_id= | |entrez_id=10005 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.531250 | |gc_percent=0.531250 | ||
|gene_alias= | |gene_alias=HNAACTE{{!}}NAP1{{!}}PTE-1{{!}}PTE-2{{!}}PTE1{{!}}PTE2{{!}}hACTE-III{{!}}hTE | ||
|gene_description= | |gene_description=acyl-CoA thioesterase 8 | ||
|gene_id=10005 | |gene_id=10005 | ||
|gene_name= | |gene_name=ACOT8 | ||
|gene_source=HGNC:15919 | |gene_source=HGNC:15919 | ||
|gene_symbol=ACOT8 | |gene_symbol=ACOT8 | ||
|gene_synonyms=NAP1 PTE-2 hACTE-III hTE | |gene_synonyms=NAP1 PTE-2 hACTE-III hTE | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:15919 | |hgnc_mgi_id=HGNC:15919 | ||
|nearest_ensembl= | |methods=C1CAGE{{!}}NETCAGE{{!}}CAGE{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}oligo_capping{{!}}ReCappable-seq{{!}}RAMPAGE{{!}}STRIPE-seq | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000101473 | ||
|nearest_refseq= | |nearest_promoter_id=NM_005469 | ||
|nearest_unigene= | |nearest_refseq=NM_005469 | ||
|nearest_unigene=Hs.444776 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA597322 | |||
|species=human | |species=human | ||
|start= | |start=45857354 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000217455.9 ENST00000461272.5 ENST00000488679.5 ENST00000493118.5 ENST00000483141.1 ENST00000484783.1 ENST00000486165.5 ENST00000481938.5 X86032 AK056668 AK298783 AK296973 AK292494 | |transcript_name=ENST00000217455.9 ENST00000461272.5 ENST00000488679.5 ENST00000493118.5 ENST00000483141.1 ENST00000484783.1 ENST00000486165.5 ENST00000481938.5 X86032 AK056668 AK298783 AK296973 AK292494 | ||
|tss_cluster_detected= | |tss_cluster_detected=11 | ||
|tss_id=rfhg_221178.1 | |tss_id=rfhg_221178.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=B4DLF4 B4DQG0 E9PIS4 E9PJN0 E9PMC4 E9PRD4 F6VBM3 O14734 | |uniprot_id=B4DLF4 B4DQG0 E9PIS4 E9PJN0 E9PMC4 E9PRD4 F6VBM3 O14734 | ||
}} | }} | ||
Latest revision as of 03:58, 8 December 2023
Basic information about the TSS
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| Source datasets | PRJDB5282|PRJNA4843412|DRA013844|PRJNA615891|PRJNA401781 |PRJNA548673|PRJNA597322 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | C1CAGE|NETCAGE|CAGE|SLIC_CAGE|TIF-seq2|oligo_capping |ReCappable-seq|RAMPAGE|STRIPE-seq | |||||||||||||
| TSS cluster detected* | 11 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3303988,EH38E2115746) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 7 |
|---|---|
| Nearest PromoterID: | NM_005469 |
| Entrez ID: | 10005 |
| Nearest Unigene: | Hs.444776 |
| Nearest Refseq: | NM_005469 |
| Nearest Ensembl: | ENSG00000101473 |
| Gene Name: | ACOT8 |
| Gene Alias: | HNAACTE|NAP1|PTE-1|PTE-2|PTE1|PTE2|hACTE-III|hTE |
| Gene Description: | acyl-CoA thioesterase 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.063492 |
| GC%: | 0.531250 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.