TSS: Rfhg 227037.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=TTS ( | |all_trans=MP015119:-423 MP015286:-458 MB406881:-458 MB407790:-460 NR_106873.1:-463 MB407273:-463 | ||
|annotation=TTS (NR_106873) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D3348603,EH38E2147152) | |ccre_description=pELS,CTCF-bound (EH38D3348603,EH38E2147152) | ||
|chr=chr21 | |chr=chr21 | ||
|cpg_percent=0.200000 | |cpg_percent=0.200000 | ||
|detailed_annotation= | |detailed_annotation=TTS (NR_106873) | ||
|distance=-423 | |distance=-423 | ||
|distance_to_tss=468 | |distance_to_tss=468 | ||
|end=45478739 | |end=45478739 | ||
|entrez_id= | |entrez_id=102465489 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.454545 | |gc_percent=0.454545 | ||
|gene_alias= | |gene_alias=hsa-mir-6815 | ||
|gene_description= | |gene_description=microRNA 6815 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000275167 | ||
|nearest_refseq= | |nearest_promoter_id=NR_106873 | ||
|nearest_unigene= | |nearest_refseq=NR_106873 | ||
|nearest_transcripts=MP015286:-458 MB406881:-458 MB407790:-460 NR_106873.1:-463 MB407273:-463 | |||
|nearest_unigene= | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=45478729 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 02:51, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3348603,EH38E2147152) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 468 |
|---|---|
| Nearest PromoterID: | NR_106873 |
| Entrez ID: | 102465489 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_106873 |
| Nearest Ensembl: | ENSG00000275167 |
| Gene Name: | |
| Gene Alias: | hsa-mir-6815 |
| Gene Type: | ncRNA |
| CpG%: | 0.200000 |
| GC%: | 0.454545 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |