TSS: Rfhg 227526.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=intron (ENST00000441493.6, intron 1 of 31)
|all_trans=
|annotation=intron (NM_015241, intron 1 of 31)
|ccre_category=dELS
|ccre_category=dELS
|ccre_description=dELS,CTCF-bound (EH38D3351444,EH38E2149061)
|ccre_description=dELS,CTCF-bound (EH38D3351444,EH38E2149061)
|chr=chr22
|chr=chr22
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-intron (ENST00000424046.1, intron 1 of 2)
|detailed_annotation=intron (NM_015241, intron 1 of 31)
|distance=
|distance=
|distance_to_tss=-13586
|distance_to_tss=-13574
|end=17920462
|end=17920462
|entrez_id=ENSG00000243156
|entrez_id=57553
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.400000
|gc_percent=0.400000
|gene_alias=
|gene_alias=MICAL-3
|gene_description=
|gene_description=microtubule associated monooxygenase, calponin and LIM domain containing 3
|gene_id=
|gene_id=
|gene_name=
|gene_name=
Line 19: Line 20:
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000585038.1
|nearest_ensembl=ENSG00000243156
|nearest_refseq=
|nearest_promoter_id=NM_001122731
|nearest_unigene=ENST00000252134
|nearest_refseq=NM_015241
|nearest_transcripts=
|nearest_unigene=Hs.528024
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=17920457
|start=17920458
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 02:59, 15 March 2025

Basic information about the TSS


TSS ID:rfhg_227526.1
Species:human
Chr:chr22
Start:17920458
End:17920462
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:dELS,CTCF-bound (EH38D3351444,EH38E2149061)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:-13574
    Nearest PromoterID:NM_001122731
    Entrez ID:57553
    Nearest Unigene:Hs.528024
    Nearest Refseq:NM_015241
    Nearest Ensembl:ENSG00000243156
    Gene Name:
    Gene Alias:MICAL-3
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.400000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):