TSS: Rfhg 229779.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=TTS (ENST00000403313.5) |ccre_category=dELS |ccre_description=dELS (EH38D3368976,EH38E2161900) |chr=chr22 |cpg_percent=0.050000 |detailed_annotation=...") |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |all_trans= | ||
|annotation=3' UTR (NM_012473, exon 4 of 4) | |||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EH38D3368976,EH38E2161900) | |ccre_description=dELS (EH38D3368976,EH38E2161900) | ||
|chr=chr22 | |chr=chr22 | ||
|cpg_percent=0.050000 | |cpg_percent=0.050000 | ||
|detailed_annotation= | |detailed_annotation=3' UTR (NM_012473, exon 4 of 4) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=14046 | ||
|end=36467604 | |end=36467604 | ||
|entrez_id= | |entrez_id=25828 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.714286 | |gc_percent=0.714286 | ||
|gene_alias= | |gene_alias=COXPD29{{!}}MT-TRX{{!}}MTRX{{!}}TRX2{{!}}TXN | ||
|gene_description= | |gene_description=thioredoxin 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000100348 | ||
|nearest_refseq= | |nearest_promoter_id=NM_012473 | ||
|nearest_unigene= | |nearest_refseq=NM_012473 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.211929 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=36467584 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 03:39, 15 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D3368976,EH38E2161900) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 14046 |
|---|---|
| Nearest PromoterID: | NM_012473 |
| Entrez ID: | 25828 |
| Nearest Unigene: | Hs.211929 |
| Nearest Refseq: | NM_012473 |
| Nearest Ensembl: | ENSG00000100348 |
| Gene Name: | |
| Gene Alias: | COXPD29|MT-TRX|MTRX|TRX2|TXN |
| Gene Type: | protein-coding |
| CpG%: | 0.050000 |
| GC%: | 0.714286 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |