TSS: Rfhg 230790.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001018052) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr22 | |chr=chr22 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001018052) | ||
|distance= | |distance= | ||
|distance_to_tss=-265 | |distance_to_tss=-265 | ||
|end=41544872 | |end=41544872 | ||
|entrez_id= | |entrez_id=171568 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias= | |gene_alias=RPC22.9{{!}}RPC8 | ||
|gene_description= | |gene_description=RNA polymerase III subunit H | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=POLR3H | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000100413 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001282884 | ||
|nearest_unigene= | |nearest_refseq=NM_138338 | ||
|nearest_unigene=Hs.712617 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891 | |||
|species=human | |species=human | ||
|start= | |start=41544870 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name= | |transcript_name= | ||
|tss_cluster_detected= | |tss_cluster_detected=4 | ||
|tss_id=rfhg_230790.1 | |tss_id=rfhg_230790.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 06:44, 8 December 2023
Basic information about the TSS
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| Source datasets | PRJNA401781|PRJNA548673|PRJNA615891 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|ReCappable-seq|SLIC_CAGE | |||||||||||||
| TSS cluster detected* | 4 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -265 |
|---|---|
| Nearest PromoterID: | NM_001282884 |
| Entrez ID: | 171568 |
| Nearest Unigene: | Hs.712617 |
| Nearest Refseq: | NM_138338 |
| Nearest Ensembl: | ENSG00000100413 |
| Gene Name: | POLR3H |
| Gene Alias: | RPC22.9|RPC8 |
| Gene Description: | RNA polymerase III subunit H |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |