TSS: Rfhg 230982.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000357802.6:0 ENST00000437211.5:0 ENST00000458605.5:0 ENST00000566851.5:0 NR_002184.2:0 AK098201:0 BC053540:0 BC014647:0 BC007736:0 ENST00000421116.1:2 AL157851:3 BC143340:-56 | ||
|annotation=promoter-TSS (NR_002184) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3375723,EH38E2167281) | |ccre_description=PLS,CTCF-bound (EH38D3375723,EH38E2167281) | ||
|chr=chr22 | |chr=chr22 | ||
|cpg_percent=0.136364 | |cpg_percent=0.136364 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_002184) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=-10 | |distance_to_tss=-10 | ||
|end=42582043 | |end=42582043 | ||
|entrez_id= | |entrez_id=91695 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.733333 | |gc_percent=0.733333 | ||
|gene_alias= | |gene_alias=RRP7B{{!}}dJ222E13.2 | ||
|gene_description= | |gene_description=ribosomal RNA processing 7 homolog B, pseudogene | ||
|gene_id=91695 | |gene_id=91695 | ||
|gene_name=ribosomal RNA processing 7 homolog B, pseudogene | |gene_name=ribosomal RNA processing 7 homolog B, pseudogene | ||
| Line 19: | Line 20: | ||
|gene_symbol=RRP7BP | |gene_symbol=RRP7BP | ||
|gene_synonyms=dJ222E13.2 | |gene_synonyms=dJ222E13.2 | ||
|gene_type= | |gene_type=pseudo | ||
|hgnc_mgi_id=HGNC:30454 | |hgnc_mgi_id=HGNC:30454 | ||
|nearest_ensembl= | |methods=NETCAGE{{!}}CAGE{{!}}RAMPAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}STRIPE-seq | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000182841 | ||
|nearest_refseq= | |nearest_promoter_id=NR_002184 | ||
|nearest_unigene= | |nearest_refseq=NR_002184 | ||
|nearest_transcripts=ENST00000421116.1:2 AL157851:3 BC143340:-56 | |||
|nearest_unigene=Hs.534041 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA597322 | |||
|species=human | |species=human | ||
|start= | |start=42581999 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000357802.6 ENST00000437211.5 ENST00000458605.5 ENST00000566851.5 AK098201 BC053540 BC014647 BC007736 | |transcript_name=ENST00000357802.6 ENST00000437211.5 ENST00000458605.5 ENST00000566851.5 AK098201 BC053540 BC014647 BC007736 | ||
|tss_cluster_detected= | |tss_cluster_detected=9 | ||
|tss_id=rfhg_230982.1 | |tss_id=rfhg_230982.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 04:01, 15 March 2025
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844|PRJNA401781|PRJNA548673|PRJNA615891 |PRJNA597322 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE|RAMPAGE|ReCappable-seq|SLIC_CAGE|TIF-seq2 |STRIPE-seq | |||||||||||||
| TSS cluster detected* | 9 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3375723,EH38E2167281) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NR_002184 |
| Entrez ID: | 91695 |
| Nearest Unigene: | Hs.534041 |
| Nearest Refseq: | NR_002184 |
| Nearest Ensembl: | ENSG00000182841 |
| Gene Name: | ribosomal RNA processing 7 homolog B, pseudogene |
| Gene Alias: | RRP7B|dJ222E13.2 |
| Gene Type: | pseudo |
| CpG%: | 0.136364 |
| GC%: | 0.733333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.