TSS: Rfhg 233796.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000359361.2:6 X97868:6 NM_004042.5:-28 | ||
|annotation=promoter-TSS (NM_004042) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D4256616,EH38E2739846) | |ccre_description=PLS (EH38D4256616,EH38E2739846) | ||
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_004042) | ||
|distance=6 | |distance=6 | ||
|distance_to_tss= | |distance_to_tss=28 | ||
|end=3066827 | |end=3066827 | ||
|entrez_id= | |entrez_id=416 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
|gene_alias= | |gene_alias=ASF | ||
|gene_description= | |gene_description=arylsulfatase F | ||
|gene_id=416 | |gene_id=416 | ||
|gene_name=arylsulfatase F | |gene_name=arylsulfatase F | ||
| Line 19: | Line 20: | ||
|gene_symbol=ARSF | |gene_symbol=ARSF | ||
|gene_synonyms=ASF | |gene_synonyms=ASF | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:721 | |hgnc_mgi_id=HGNC:721 | ||
|nearest_ensembl= | |methods=TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000062096 | ||
|nearest_refseq= | |nearest_promoter_id=NM_004042 | ||
|nearest_unigene= | |nearest_refseq=NM_004042 | ||
|nearest_transcripts=NM_004042.5:-28 | |||
|nearest_unigene=Hs.101674 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start= | |start=3066827 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 04:48, 15 March 2025
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D4256616,EH38E2739846) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_004042 |
| Entrez ID: | 416 |
| Nearest Unigene: | Hs.101674 |
| Nearest Refseq: | NM_004042 |
| Nearest Ensembl: | ENSG00000062096 |
| Gene Name: | arylsulfatase F |
| Gene Alias: | ASF |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.