TSS: Rfhg 237795.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000447531.5:-51 ENST00000448867.1:-51 NM_001142530.1:-51 NM_001142529.1:-51 ENST00000372735.1:64 | ||
|annotation=promoter-TSS (NM_001142529) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4298761,EH38E2762043) | |ccre_description=PLS,CTCF-bound (EH38D4298761,EH38E2762043) | ||
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001142529) | ||
|distance=-51 | |distance=-51 | ||
|distance_to_tss=51 | |distance_to_tss=51 | ||
|end=102746030 | |end=102746030 | ||
|entrez_id= | |entrez_id=80823 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.000000 | |gc_percent=0.000000 | ||
|gene_alias= | |gene_alias=GASP3{{!}}p60TRP | ||
|gene_description= | |gene_description=basic helix-loop-helix family member b9 | ||
|gene_id=80823 | |gene_id=80823 | ||
|gene_name=G protein-coupled receptor associated sorting protein family member 3 | |gene_name=G protein-coupled receptor associated sorting protein family member 3 | ||
| Line 19: | Line 20: | ||
|gene_symbol=GPRASP3 | |gene_symbol=GPRASP3 | ||
|gene_synonyms=GASP3 KIAA1701 p60TRP | |gene_synonyms=GASP3 KIAA1701 p60TRP | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:29353 | |hgnc_mgi_id=HGNC:29353 | ||
|nearest_ensembl= | |methods=TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000198908 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001142530 | ||
|nearest_unigene= | |nearest_refseq=NM_030639 | ||
|nearest_transcripts=ENST00000372735.1:64 | |||
|nearest_unigene=Hs.4276 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start= | |start=102746030 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 06:01, 15 March 2025
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4298761,EH38E2762043) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 51 |
|---|---|
| Nearest PromoterID: | NM_001142530 |
| Entrez ID: | 80823 |
| Nearest Unigene: | Hs.4276 |
| Nearest Refseq: | NM_030639 |
| Nearest Ensembl: | ENSG00000198908 |
| Gene Name: | G protein-coupled receptor associated sorting protein family member 3 |
| Gene Alias: | GASP3|p60TRP |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.