TSS: Rfhg 237797.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=TTS (ENST00000486988.1)
|all_trans=AB384263:283 AF547055:284 KJ904893:286
|annotation=5' UTR (NM_001142526, exon 4 of 4)
|ccre_category=N
|ccre_category=N
|ccre_description=N
|ccre_description=N
|chr=chrX
|chr=chrX
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-TTS (ENST00000486988.1)
|detailed_annotation=5' UTR (NM_001142526, exon 4 of 4)
|distance=283
|distance=283
|distance_to_tss=2615
|distance_to_tss=2730
|end=102748709
|end=102748709
|entrez_id=ENSG00000198908
|entrez_id=80823
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.000000
|gc_percent=0.000000
|gene_alias=
|gene_alias=GASP3{{!}}p60TRP
|gene_description=
|gene_description=basic helix-loop-helix family member b9
|gene_id=80823
|gene_id=80823
|gene_name=G protein-coupled receptor associated sorting protein family member 3
|gene_name=G protein-coupled receptor associated sorting protein family member 3
Line 19: Line 20:
|gene_symbol=GPRASP3
|gene_symbol=GPRASP3
|gene_synonyms=GASP3 KIAA1701 p60TRP
|gene_synonyms=GASP3 KIAA1701 p60TRP
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:29353
|hgnc_mgi_id=HGNC:29353
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000372735.1
|nearest_ensembl=ENSG00000198908
|nearest_refseq=
|nearest_promoter_id=NM_001142530
|nearest_unigene=ENST00000372735
|nearest_refseq=NM_030639
|nearest_transcripts=AF547055:284 KJ904893:286
|nearest_unigene=Hs.4276
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=102748708
|start=102748709
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 06:01, 15 March 2025

Basic information about the TSS


TSS ID:rfhg_237797.1
Species:human
Chr:chrX
Start:102748709
End:102748709
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:AB384263:283
GeneID:80823
HGNC/MGI_ID:HGNC:29353
UniProt_ID:
Nearer transcript ids and distances:
  • AF547055:284
  • KJ904893:286
view more...
Gene_name:G protein-coupled receptor associated sorting protein family member 3
Gene_symbol:GPRASP3
Gene_synonyms:GASP3 KIAA1701 p60TRP
Gene_source:HGNC:29353



TATA-Box annotation


Distance to TSS:2730
Nearest PromoterID:NM_001142530
Entrez ID:80823
Nearest Unigene:Hs.4276
Nearest Refseq:NM_030639
Nearest Ensembl:ENSG00000198908
Gene Name:G protein-coupled receptor associated sorting protein family member 3
Gene Alias:GASP3|p60TRP
Gene Type:protein-coding
CpG%:0.000000
GC%:0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.