TSS: Rfhg 237797.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=TTS (ENST00000486988.1) |ccre_category=N |ccre_description=N |chr=chrX |cpg_percent=0.000000 |detailed_annotation=protein_coding-TTS (ENST00000486988...") |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |all_trans=AB384263:283 AF547055:284 KJ904893:286 | ||
|annotation=5' UTR (NM_001142526, exon 4 of 4) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=5' UTR (NM_001142526, exon 4 of 4) | ||
|distance=283 | |distance=283 | ||
|distance_to_tss= | |distance_to_tss=2730 | ||
|end=102748709 | |end=102748709 | ||
|entrez_id= | |entrez_id=80823 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.000000 | |gc_percent=0.000000 | ||
|gene_alias= | |gene_alias=GASP3{{!}}p60TRP | ||
|gene_description= | |gene_description=basic helix-loop-helix family member b9 | ||
|gene_id=80823 | |gene_id=80823 | ||
|gene_name=G protein-coupled receptor associated sorting protein family member 3 | |gene_name=G protein-coupled receptor associated sorting protein family member 3 | ||
Line 19: | Line 20: | ||
|gene_symbol=GPRASP3 | |gene_symbol=GPRASP3 | ||
|gene_synonyms=GASP3 KIAA1701 p60TRP | |gene_synonyms=GASP3 KIAA1701 p60TRP | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:29353 | |hgnc_mgi_id=HGNC:29353 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000198908 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001142530 | ||
|nearest_unigene= | |nearest_refseq=NM_030639 | ||
|nearest_transcripts=AF547055:284 KJ904893:286 | |||
|nearest_unigene=Hs.4276 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=102748709 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= |
Latest revision as of 06:01, 15 March 2025
Basic information about the TSS
|
| |||||||||||||
Source datasets | FANTOM5 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | - |
---|---|
Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | 2730 |
---|---|
Nearest PromoterID: | NM_001142530 |
Entrez ID: | 80823 |
Nearest Unigene: | Hs.4276 |
Nearest Refseq: | NM_030639 |
Nearest Ensembl: | ENSG00000198908 |
Gene Name: | G protein-coupled receptor associated sorting protein family member 3 |
Gene Alias: | GASP3|p60TRP |
Gene Type: | protein-coding |
CpG%: | 0.000000 |
GC%: | 0.000000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.