TSS: Rfhg 238698.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000217909.8:0 ENST00000488158.5:0 NM_145305.3:0 AK094254:0 BC071871:0 AK303932:0 AK091304:0 AK292035:0 CU676444:3 HQ447835:3 KJ900434:3 ENST00000493093.5:8 AL590525:126 BC019584:-247 | ||
|annotation=promoter-TSS (NM_145305) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D4306591,EH38E2766116) | |ccre_description=pELS,CTCF-bound (EH38D4306591,EH38E2766116) | ||
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.127660 | |cpg_percent=0.127660 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_145305) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=18 | ||
|end=119399401 | |end=119399401 | ||
|entrez_id= | |entrez_id=203427 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.831579 | |gc_percent=0.831579 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=solute carrier family 25 member 43 | ||
|gene_id=203427 | |gene_id=203427 | ||
|gene_name=solute carrier family 25 member 43 | |gene_name=solute carrier family 25 member 43 | ||
| Line 19: | Line 20: | ||
|gene_symbol=SLC25A43 | |gene_symbol=SLC25A43 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:30557 | |hgnc_mgi_id=HGNC:30557 | ||
|nearest_ensembl= | |methods=NETCAGE{{!}}CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000077713 | ||
|nearest_refseq= | |nearest_promoter_id=NM_145305 | ||
|nearest_unigene= | |nearest_refseq=NM_145305 | ||
|nearest_transcripts=CU676444:3 HQ447835:3 KJ900434:3 ENST00000493093.5:8 AL590525:126 BC019584:-247 | |||
|nearest_unigene=Hs.496658 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start= | |start=119399307 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000217909.8 ENST00000488158.5 AK094254 BC071871 AK303932 AK091304 AK292035 | |transcript_name=ENST00000217909.8 ENST00000488158.5 AK094254 BC071871 AK303932 AK091304 AK292035 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfhg_238698.1 | |tss_id=rfhg_238698.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A8K7M0 B4E1P8 Q8WUT9 | |uniprot_id=A8K7M0 B4E1P8 Q8WUT9 | ||
}} | }} | ||
Latest revision as of 06:19, 15 March 2025
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D4306591,EH38E2766116) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_145305 |
| Entrez ID: | 203427 |
| Nearest Unigene: | Hs.496658 |
| Nearest Refseq: | NM_145305 |
| Nearest Ensembl: | ENSG00000077713 |
| Gene Name: | solute carrier family 25 member 43 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.127660 |
| GC%: | 0.831579 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.